View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_low_4 (Length: 482)
Name: NF19023_low_4
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 5 - 469
Target Start/End: Complemental strand, 40087129 - 40086665
Alignment:
| Q |
5 |
tacctctaggtttggaccaagagaagtaatcttgggttctgcagctgttaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccc |
104 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40087129 |
tacctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccc |
40087030 |
T |
|
| Q |
105 |
cacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaatccaatcgtccagtgtaatttctcttctatatacaagaaataaactatg |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
40087029 |
cacttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatc |
40086930 |
T |
|
| Q |
205 |
catgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataataaggttgaaggag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40086929 |
catgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataagaaggttgaaggag |
40086830 |
T |
|
| Q |
305 |
tcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgttt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40086829 |
tcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgttt |
40086730 |
T |
|
| Q |
405 |
ttagtcaagcaatgaaaaatgatacaatatcagctaattcctcttagagccaatttttcagtgaa |
469 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40086729 |
ttagtcaagcaatgaaaaatgatacagtatcagctaattcctcttagagccaatttttcagtgaa |
40086665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 450
Target Start/End: Complemental strand, 40061244 - 40060785
Alignment:
| Q |
5 |
tacctctaggtttggaccaagagaagtaatcttgggttctgcagctgttaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| |||| ||||| ||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
40061244 |
tacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccc |
40061145 |
T |
|
| Q |
105 |
cacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaatc--------------caatcgtccagtgtaatttctcttctatataca |
190 |
Q |
| |
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||||||||||||||||||| |||||||| || |||| || |||| ||||||| |||| ||||||||||||||||||| | ||| | |
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| T |
40061144 |
cacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatata |
40061045 |
T |
|
| Q |
191 |
agaaataaactatgcatgtgatattatcaatttatcttcttcgatgtattaccagtgttgtattt-gtgacggctacaacatgaacaatagat-ttcaat |
288 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||| |||| ||||||||||||||||| | || || | | |
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| T |
40061044 |
agaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctacaacatgaacaacatatatttagt |
40060945 |
T |
|
| Q |
289 |
aataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttc |
388 |
Q |
| |
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| ||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
40060944 |
atgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttc |
40060847 |
T |
|
| Q |
389 |
ctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaattcctctta |
450 |
Q |
| |
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|||||||||||||||||| || ||||| |||||||||||| ||||| ||||||||||||| |
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|
| T |
40060846 |
ctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
40060785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 469
Target Start/End: Complemental strand, 40079368 - 40078892
Alignment:
| Q |
5 |
tacctctaggtttggaccaagagaagtaatcttgggttctgcagctgttaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccc |
104 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||| || | |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
40079368 |
tacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggccttgtgtacatctttaagatgaccc |
40079269 |
T |
|
| Q |
105 |
cacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaatcc-----aatcgtccagtgtaatttctcttctatatacaagaaataaa |
199 |
Q |
| |
|
||||| |||||||||||| ||||||||| | ||| |||||| ||| | | ||| |||||||||||||||||||||| ||| |||||| || |
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| T |
40079268 |
cacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaatttctcttctaaataaaagaaaataa |
40079169 |
T |
|
| Q |
200 |
ctatgcatgtgatattatcaatttatcttcttcgatg-------tattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataata |
292 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||| | ||||||||||| || ||||| || ||||||||||||||||| | || || || |
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| T |
40079168 |
ctatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctacaacatgaacaaaatatactcgtatta |
40079069 |
T |
|
| Q |
293 |
aggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctcc |
392 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
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| T |
40079068 |
aggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagttggttcctcc |
40078969 |
T |
|
| Q |
393 |
atggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaattcctcttagagccaatttttcagtgaa |
469 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||||| | ||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
40078968 |
atggtactgtttttgggcaagcaataaaaaatgataaagtattagctaattcctcttagagccaatttttccgtgaa |
40078892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 22014236 - 22014313
Alignment:
| Q |
54 |
aatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccccacttcggctgcctaataactcctgca |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||| |||||||| |
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|
| T |
22014236 |
aatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 405
Target Start/End: Original strand, 22014420 - 22014519
Alignment:
| Q |
306 |
cataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
405 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
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| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 52548938 - 52548999
Alignment:
| Q |
339 |
ataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
400 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | |||| |||||||| ||||||||||| |||| |
|
|
| T |
52548938 |
ataacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 35259417 - 35259377
Alignment:
| Q |
308 |
taccatactcatcaatcggtgcatcaaaatcataacttgta |
348 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
35259417 |
taccatactcatcaattggagcatcataatcataacttgta |
35259377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 52647440 - 52647348
Alignment:
| Q |
308 |
taccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
400 |
Q |
| |
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||||||| |||||||| || |||||| | ||||| ||||||| ||||||||| || |||| ||| |||| ||||||||||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtact |
52647348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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