View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_low_5 (Length: 423)
Name: NF19023_low_5
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 38136047 - 38136450
Alignment:
| Q |
10 |
attatactaatgagcatgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactga |
109 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38136047 |
attacactaatgagcatgctatttccattcacgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactga |
38136146 |
T |
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| Q |
110 |
aatcttagaatgtacttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggccca |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38136147 |
aatcatagaatgtacttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggccca |
38136246 |
T |
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| Q |
210 |
acataacttgcatatcccagtttaagtaattcatgctgaaaatattagtgcattaggatggactatcatggttagataacatgttggcaaataaaca--- |
306 |
Q |
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| T |
38136247 |
acataacttgcatatcccagtttaagtaattcatgctgaaaatactagtgcatttggatggactatcatggttagataacatgttgacaaataaacaaga |
38136346 |
T |
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| Q |
307 |
---attattcaaagagaaattgttaacataccaaatgaaaatagaatccagtgccacaatgggattggggagcagccctgatatgagcacaagtccctga |
403 |
Q |
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| T |
38136347 |
aacattattcaaagagaaattgttaacataccaaatggaaatagaatccagtgccacagtgggattggggagcagccctgatatgagcacaagtccctga |
38136446 |
T |
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| Q |
404 |
ttgt |
407 |
Q |
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|||| |
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| T |
38136447 |
ttgt |
38136450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 39312632 - 39312239
Alignment:
| Q |
16 |
ctaatgagcatgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatctt |
115 |
Q |
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|||||||| ||||||||| |||||| |||||||||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||| |||||||| | |
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| T |
39312632 |
ctaatgaggatgctatttgcattcacgacgaagacagaaaattttgctactcttggatgatctgctcctaactc--tgctaactcgcaccctgaaatcat |
39312535 |
T |
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| Q |
116 |
agaatgtacttttac-atgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggcccaacata |
214 |
Q |
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| T |
39312534 |
aggatctacttttaatatgtttgtgtggaagttgtttaaatgaaaagcattgtttttgtcgattgtcactaaccttgctgctgcaccaaggcccaacata |
39312435 |
T |
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| Q |
215 |
acttgcatatcccagtttaagtaattcatgctgaaaatattagtgcattaggatggactatcatggttagataacatgttggcaaataaaca---attat |
311 |
Q |
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| T |
39312434 |
acttgcatatcccagtctaagtaattcatgctgaaaataaaagtatattacaatggagtatcatggttaaatgaaatggtggcaaataataagagactat |
39312335 |
T |
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| Q |
312 |
tcaaagagaaattgttaacataccaaatgaaaatagaatccagtgccacaatgggattggggagcagccctgatatgagcacaagtccctgattgt |
407 |
Q |
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| T |
39312334 |
tctaagagaaattgttaacataccaaatggaaatagaatctagtgccactgtgggattagatagcaggcctgaaacaagcaatagtccctgattgt |
39312239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 39317085 - 39316694
Alignment:
| Q |
19 |
atgagcatgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatcttaga |
118 |
Q |
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||||| || ||||| ||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
39317085 |
atgaggatactattcccattcacgacgaagatggcaaattttgctactcttggatgagctgctcctaattcattgctaattcgcacactgaaattacagg |
39316986 |
T |
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| Q |
119 |
atgtacttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttga-caattgtcgcaaaccttgctgctgcaccaaggcccaacataact |
217 |
Q |
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| T |
39316985 |
acctactttta-atataagt--gaaaattgtctaaatagaacacattgtttttggtcaattgtcactaacctggctgctgcaccaaggcccaacatgact |
39316889 |
T |
|
| Q |
218 |
tgcatatcccagtttaagtaattcatgctgaaaatattagtgcattaggatggactatcatggttagataacatgttggcaaata-----aacaattatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| || |||||| |
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| T |
39316888 |
tgcatatcccagtttaagtaattcatgctgaaaatggaagtacattaggatggagtatcatggttagataacatgttggcaaatattaagaaacattatt |
39316789 |
T |
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| Q |
313 |
caaagagaaattgttaacataccaaatgaaaatagaatccagtgccacaatgggattggggagcagccctgatatgagcacaagtccctgattgt |
407 |
Q |
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| T |
39316788 |
ctaagagaaattgttaacataccaaatggaaatagaatccagtgccactgtgggattagatagcagccctgatatgagtactagtccttgattgt |
39316694 |
T |
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