View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_low_6 (Length: 383)
Name: NF19023_low_6
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 38835502 - 38835132
Alignment:
| Q |
1 |
tcagatagtgataatgaagtcattgatga------cgacttcgaagtacaacagaaggctgccctagttaagaagggagggagaaagcctgctgctcaaa |
94 |
Q |
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| T |
38835502 |
tcagatagtgataatgaagtcattgatgatgatgacgacttcgaagtacaatagaaggctgccctagttaagaagggagggagaaagcctgctgctcaaa |
38835403 |
T |
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| Q |
95 |
atgccaagacggcatctaccgcccccaagaaaagaaatgtaggcaccagacaaacattgggtcaaaaattatttactgatatgttgcagtcagctgaaag |
194 |
Q |
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| T |
38835402 |
atgccaagacggcatctaccgcccccaagaaaagaaatgtaggcaccagacaaacattgggtcaaaaattatttactgatatgttttagtcagctgaaag |
38835303 |
T |
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| Q |
195 |
tacagctacttcaccagagaagaaagtgaggaagatgagggag-ctccatttaacaagaaaagtagcggttctatactggacagtgctgctaacaaggat |
293 |
Q |
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| T |
38835302 |
tacagctacttcaccagagaagaaagtgaggaagatgagggagtctccatttaacaagaaaagtagcggttctatactggacagggctgctaacaaggat |
38835203 |
T |
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| Q |
294 |
acaaatcaaattgaagatttgtctgctggttctgcttctaactctcctatagcaaagaatgaggtggttga |
364 |
Q |
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| T |
38835202 |
acaaatcaaattgaagatttgtctgctggttctgcttctaactctcctatagcaaagaatgaggtggttga |
38835132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 118 - 364
Target Start/End: Complemental strand, 9869823 - 9869579
Alignment:
| Q |
118 |
cccaagaaaagaaatgtaggcaccagacaaacattgggtcaaaaattatttactgatatgttgcagtcagctgaaagtacagctacttcaccagagaaga |
217 |
Q |
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| T |
9869823 |
cccaagaaaagaaatgtaggcagcaaatcaacattgggtcaaaaattgttaactgatatgttgcagccagctgaaagtataggtacatcaccagagaaga |
9869724 |
T |
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| Q |
218 |
aagtgaggaagatgagggag-ctccatttaacaagaaaagtagcggttctatactggacagtgctgctaacaaggatacaaatcaaattgaagatttgtc |
316 |
Q |
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| T |
9869723 |
aagtgagaaaaatgagggagtcaccatttaacaagaagagt---ggttctatattgggcaaaactgctaacatggatataagtccaattgcagatttgtc |
9869627 |
T |
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| Q |
317 |
tgctggttctgcttctaactctcctatagcaaagaatgaggtggttga |
364 |
Q |
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| T |
9869626 |
cgagggctctacttctaactctcctactgcagaggatgaggtggttga |
9869579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 9870015 - 9869937
Alignment:
| Q |
25 |
gatgacgacttcgaagtacaacagaaggctgccctagttaagaagggagggagaaagcctgctgctcaaaatgccaaga |
103 |
Q |
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| T |
9870015 |
gatgacgacttcgaagttcaagaaaacgctgctccagctaagaagggtgggagaaagcctgctgctcaaaatgccaaga |
9869937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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