View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19023_low_7 (Length: 382)

Name: NF19023_low_7
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19023_low_7
NF19023_low_7
[»] chr2 (3 HSPs)
chr2 (16-340)||(40087754-40088077)
chr2 (16-364)||(40061907-40062257)
chr2 (16-305)||(40080042-40080330)
[»] chr4 (2 HSPs)
chr4 (67-124)||(22013633-22013690)
chr4 (234-305)||(22013454-22013525)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 40087754 - 40088077
Alignment:
Q  16 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat 115  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40087754 gaacctgtgggtatttcgaaggatgatatattgtcaaagactggattacttgagcaaataaatatcacagctgatagaagtgactacttgtggtactcat 40087853  T
Q  116 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40087854 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 40087953  T
Q  216 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaatttattcaca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40087954 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaa-ttattcaca 40088052  T
Q  316 aggatatggtttttatattttgaaa 340  Q
    |||||||||||||||||||||||||    
T  40088053 aggatatggtttttatattttgaaa 40088077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 40061907 - 40062257
Alignment:
Q  16 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat 115  Q
    |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  40061907 gaacctgtgggtatttcgaaggatgatatattttcaaaaactggattacttgagcaaataaatatcaccgctgatagaagtgactacttgtggtactcat 40062006  T
Q  116 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40062007 taaggtatacaagcctccaaatttgaaagatattttccctgaacgatgattctgtacttctcgataacacttctattatattcttttgaagcgttgatct 40062106  T
Q  216 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaatttattcaca 315  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||     
T  40062107 taaggatgatcttggttctcaaactgtacttcacattgaatcactcggccatgcccttcatgctttcgtaaacggaaagcttgcaggtaa-ttattcact 40062205  T
Q  316 agga---tatggtttttatattttgaaactctcaaagaccctgtgttattga 364  Q
    || |   ||||||| | || |||||||| ||||||||| ||||| |||||||    
T  40062206 agaattttatggttctaatgttttgaaagtctcaaagagcctgtattattga 40062257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 40080042 - 40080330
Alignment:
Q  16 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||||||||||    
T  40080042 gaacctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaataccacagctgatagaagtgattatttgtggtactcat 40080141  T
Q  116 taaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatct 215  Q
    ||||||| ||||||||||||||||||||||||||| |  |||| ||||||| ||||||||| |||||||||||| ||||||| |||| |||| |||||||    
T  40080142 taaggtacacaagcctccaaatttgaaagatatttgctttgaccgatgattatgtacttcttgataacacttctcttgtatt-ttttaaagccttgatct 40080240  T
Q  216 taaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaa 305  Q
    |  ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  40080241 tgcggatgatcccggttctcaaactgtcctgcacattgaatcacttggccatgcccttcatgctttcataaacggcaagcttgctggtaa 40080330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 22013690 - 22013633
Alignment:
Q  67 gagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtata 124  Q
    |||||||||||||  || |||||||||||||||||||| |||||||||||||||||||    
T  22013690 gagcaaataaacacgacggctgatagaagtgactacttatggtactcattaaggtata 22013633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 22013525 - 22013454
Alignment:
Q  234 tcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaa 305  Q
    |||| |||| |||||||||||||| || ||||||||||||||||||||  |||| || |||||||| |||||    
T  22013525 tcaacctgttcttcacattgaatcccttggccatgcccttcatgcttttgtaaatgggaagcttgctggtaa 22013454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University