View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_high_12 (Length: 326)

Name: NF19024_high_12
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_high_12
NF19024_high_12
[»] chr1 (14 HSPs)
chr1 (8-318)||(7740906-7741210)
chr1 (23-166)||(15581519-15581654)
chr1 (29-164)||(50678182-50678314)
chr1 (23-166)||(42365839-42365970)
chr1 (23-101)||(16302748-16302826)
chr1 (6-164)||(34969739-34969881)
chr1 (29-101)||(42934226-42934301)
chr1 (40-139)||(41404048-41404139)
chr1 (6-74)||(48046435-48046504)
chr1 (129-166)||(48046405-48046442)
chr1 (29-101)||(19551225-19551297)
chr1 (181-245)||(46205370-46205434)
chr1 (29-101)||(49764907-49764979)
chr1 (27-101)||(23473769-23473843)
[»] chr3 (15 HSPs)
chr3 (29-166)||(27011134-27011263)
chr3 (1-166)||(39439878-39440041)
chr3 (29-166)||(42029332-42029466)
chr3 (115-166)||(32278316-32278367)
chr3 (66-163)||(44713184-44713273)
chr3 (29-166)||(25045315-25045454)
chr3 (33-101)||(40026083-40026151)
chr3 (7-93)||(2230127-2230209)
chr3 (129-166)||(2230242-2230279)
chr3 (29-101)||(29765266-29765337)
chr3 (181-245)||(52286126-52286190)
chr3 (126-165)||(23407925-23407964)
chr3 (25-101)||(14567854-14567930)
chr3 (129-165)||(23466643-23466679)
chr3 (29-101)||(25909352-25909424)
[»] scaffold0022 (2 HSPs)
scaffold0022 (1-166)||(44137-44300)
scaffold0022 (1-166)||(77858-78021)
[»] chr4 (15 HSPs)
chr4 (12-165)||(3121182-3121328)
chr4 (8-163)||(35292001-35292149)
chr4 (1-160)||(50859126-50859278)
chr4 (34-166)||(41223714-41223838)
chr4 (29-166)||(35033864-35033998)
chr4 (170-292)||(18895213-18895337)
chr4 (29-101)||(46944056-46944128)
chr4 (1-163)||(48084633-48084793)
chr4 (29-101)||(21263630-21263702)
chr4 (29-101)||(22405046-22405118)
chr4 (6-95)||(31227714-31227804)
chr4 (29-101)||(4292687-4292759)
chr4 (115-158)||(13779289-13779332)
chr4 (63-101)||(4342109-4342147)
chr4 (40-101)||(41809950-41810016)
[»] chr5 (8 HSPs)
chr5 (1-166)||(11617182-11617345)
chr5 (29-166)||(4943475-4943609)
chr5 (1-101)||(7506002-7506103)
chr5 (23-101)||(9159446-9159522)
chr5 (29-101)||(30084910-30084982)
chr5 (132-166)||(30084858-30084892)
chr5 (1-75)||(29293199-29293274)
chr5 (129-166)||(41483507-41483544)
[»] chr7 (8 HSPs)
chr7 (1-166)||(36657620-36657779)
chr7 (29-166)||(23417263-23417387)
chr7 (29-164)||(19625367-19625499)
chr7 (18-101)||(5925167-5925250)
chr7 (181-245)||(25029729-25029793)
chr7 (62-101)||(29428919-29428958)
chr7 (31-101)||(261798-261867)
chr7 (40-101)||(12633429-12633495)
[»] chr8 (6 HSPs)
chr8 (29-166)||(42025397-42025526)
chr8 (6-166)||(38679689-38679847)
chr8 (34-165)||(34924794-34924922)
chr8 (29-166)||(14112385-14112520)
chr8 (23-97)||(30800196-30800270)
chr8 (29-97)||(28873761-28873829)
[»] chr2 (10 HSPs)
chr2 (1-166)||(10354208-10354366)
chr2 (29-166)||(7444724-7444858)
chr2 (29-101)||(28219028-28219100)
chr2 (129-166)||(6476769-6476806)
chr2 (29-165)||(28199261-28199393)
chr2 (29-100)||(44246347-44246413)
chr2 (29-97)||(1499269-1499338)
chr2 (129-164)||(18000080-18000115)
chr2 (129-164)||(44246301-44246336)
chr2 (9-70)||(17999973-18000035)
[»] scaffold0039 (2 HSPs)
scaffold0039 (29-99)||(56928-56998)
scaffold0039 (129-166)||(56864-56901)
[»] scaffold0110 (1 HSPs)
scaffold0110 (29-166)||(38620-38739)
[»] scaffold0224 (1 HSPs)
scaffold0224 (29-101)||(12470-12545)
[»] scaffold0227 (1 HSPs)
scaffold0227 (29-101)||(238-310)
[»] scaffold0127 (1 HSPs)
scaffold0127 (40-139)||(30196-30287)
[»] chr6 (1 HSPs)
chr6 (202-248)||(33870203-33870249)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 7741210 - 7740906
Alignment:
Q  8 aatgaaaatttggttaa-tggatgg-tattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtat 105  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        
T  7741210 aatgaaaatttggttaaatggatgggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaactaaacaatggaa---- 7741115  T
Q  106 ggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagccgaagaggtgcactctggctattttttaattccttttcaa 205  Q
        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7741114 ----catggttacatcccactctattccattccaccactctccatcaatccaaacatagccgaagaggtgcactctagctattttttaattccttttcaa 7741019  T
Q  206 tttctaattgtggccactttttcaccatattctcaaatgccacaaaattgtgtgaggcatgttgtattttctgcaatctctcccaaaacaccaatattgg 305  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  7741018 tttctaattgtcgccactttttcaccatattctcaaatgccacaaaattgtgtgaggcatgttgtattttgtgcaatctctcccaaaacaccaatattag 7740919  T
Q  306 tagggatgatgtc 318  Q
    |||||| ||||||    
T  7740918 tagggaagatgtc 7740906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 15581654 - 15581519
Alignment:
Q  23 aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcc 122  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   |||     ||| |  ||||    
T  15581654 aatggatggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatgga---atg-----tggatatatcc 15581563  T
Q  123 cactctattccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  15581562 cactccattccattccatcactctccatcaatccaaacatagcc 15581519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 50678182 - 50678314
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactc- 127  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||  |||||||||||||||||||        ||||||||||||||||||||||||     
T  50678182 tggtattggatagaatgggttccatcacactccattccattccattccttttttacaaaaccaaaca--------atggaacatggttccatcccactca 50678273  T
Q  128 ----tattccattccaccactctccatcaatccaaacatag 164  Q
         ||||||||||| ||||||||||||||||||||||||    
T  50678274 atttcattccattccatcactctccatcaatccaaacatag 50678314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 42365970 - 42365839
Alignment:
Q  23 aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcc 122  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||       ||  |||||||||||||||||      
T  42365970 aatgaatggtattggatggaatgggttccatcacactccattccattccattcattttttataaaaccaa-------aacaatggaacatggttccat-- 42365880  T
Q  123 cactctattccattccaccactctccatcaatccaaacatagcc 166  Q
       || ||||||||||| ||||||||||||||||||||||||||    
T  42365879 ---tccattccattccatcactctccatcaatccaaacatagcc 42365839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 16302748 - 16302826
Alignment:
Q  23 aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    ||||||||  |||||| |||||| |||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  16302748 aatggatgacattggatggaatgagttccatcacactccattccattccattccttttttacaaaaccaaacaatggaa 16302826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 34969881 - 34969739
Alignment:
Q  6 ggaatgaaaatttgg-ttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagta 104  Q
    ||||||||||||||  ||||||  |||||||||| |||||||||||||||||||     | ||||||||| ||||||||||||| |||||||||||        
T  34969881 ggaatgaaaatttgacttaatgagtggtattggatggaatgggttccatcacac-----ttcattccattcattttttacaaaatcaaacaatgga---- 34969791  T
Q  105 tggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatag 164  Q
       ||||||||| ||||||||     ||||||||| ||||||||||||||||||||||||    
T  34969790 ---aacatggtttcatcccac-----tccattccatcactctccatcaatccaaacatag 34969739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 42934301 - 42934226
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattcc---atttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| ||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||||||    
T  42934301 tggtattggatggaatgggttccatcacactccattccattccattattttttttttacaaaaccaaacaatggaa 42934226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 41404139 - 41404048
Alignment:
Q  40 ggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattcca 139  Q
    |||||||||||||||||| || |||||||||||||  |||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||    
T  41404139 ggaatgggttccatcacattccattccattccattatttttttacaaaaccaaacaat--------ggaacatggctccatcccactccattccattcca 41404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 48046504 - 48046435
Alignment:
Q  6 ggaatgaaaatttgg-ttaatggatggtattggaaggaatgggttccatcacactctattccattccatt 74  Q
    ||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| |||||||||||||    
T  48046504 ggaatgaaaatttggcttaatgggtggtattggatggaatgagttccatcacactccattccattccatt 48046435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 48046442 - 48046405
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48046442 attccattccaccactctccatcaatccaaacatagcc 48046405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 19551225 - 19551297
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| |||||| |||||||||   |||||| |||||||||  |||||||||||||||||| ||||||    
T  19551225 tggtattggatggaatgagttccatcatgttctatttcattccattacttttttacaaaaccaaacgatggaa 19551297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 46205434 - 46205370
Alignment:
Q  181 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 245  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  46205434 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 46205370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 49764979 - 49764907
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| | |||| ||||||||| |||| ||||||| | ||| ||||||| ||||| ||||||||||||    
T  49764979 tggtattggatgaaatgagttccatcatactccattccatcctattcattttttgcaaaatcaaacaatggaa 49764907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 23473843 - 23473769
Alignment:
Q  27 gatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||| ||| ||||||| ||||||||   || ||||||||||||| | |||||||| | |||||||||||||    
T  23473843 gatggtatgggatggaatggattccatcatgttccattccattccattcaatttttacacatccaaacaatggaa 23473769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 27011263 - 27011134
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||        ||||||||||||||||||||||     
T  27011263 tggtattggatggaatgggttccatcacactccattccattccattccttttttacaaaaccaaacaat--------ggaacatggttccatcccactcc 27011172  T
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  27011171 attccattccatcactctccatcaatccaaacatagcc 27011134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 39439878 - 39440041
Alignment:
Q  1 tgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||| ||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||| |||||||||||||  |||||| ||||||||||||||||    
T  39439878 tggggggaatgaaaatttggtttaatgggtggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatgg 39439977  T
Q  100 aagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
    || |||||    |  | |||  ||| || ||||||||||||||||||||||||||||||||||||||    
T  39439978 aa-tatgg--ttttatcccactccattccattccattccaccactctccatcaatccaaacatagcc 39440041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 42029332 - 42029466
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||   |||||||||||||||||||||||||   ||     ||| ||||||||||||     
T  42029332 tggtattggatggaatgggttccatcatactccattccattccatcccttttttacaaaaccaaacaatggaa---tg-----tggctccatcccactcc 42029423  T
Q  129 attc-----cattccaccactctccatcaatccaaacatagcc 166  Q
    ||||     ||||||||||||| ||| ||||||||||||||||    
T  42029424 attccattccattccaccactcaccaccaatccaaacatagcc 42029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 32278367 - 32278316
Alignment:
Q  115 ttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  32278367 ttccatcccattccattccattccaccactctccatcaatccaaacatagcc 32278316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 44713273 - 44713184
Alignment:
Q  66 cattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacata 163  Q
    ||||||||| |||||||||||||| |||||||||||   ||     ||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  44713273 cattccattaattttttacaaaactaaacaatggaa---tg-----tggctccatccctctccattccattccaccactctccatcaatccaaacata 44713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 25045454 - 25045315
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccact-- 126  Q
    |||||||||| |||||| ||||||||||| || |||||||||||||    |||| ||||||||||||||||||   |  |||    |||||||||| |      
T  25045454 tggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaa---tctaactctattccatcccatttc 25045358  T
Q  127 ---ctattccattccaccactctccatcaatccaaacatagcc 166  Q
       | ||||||||||||||||||||||||||||||||||||||    
T  25045357 attccattccattccaccactctccatcaatccaaacatagcc 25045315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 40026083 - 40026151
Alignment:
Q  33 attggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||| ||||| |||||| ||||| || ||||||||| ||| ||||||||||||| ||||||||||||    
T  40026083 attggatggaataggttccttcacattccattccattctattcattttttacaaaatcaaacaatggaa 40026151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 2230127 - 2230209
Alignment:
Q  7 gaatgaaaatttg-gttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaa 93  Q
    ||||||||| ||| || |||||||||||||||| | |||||||||||||||     |||||||| |||| ||||||||||||||||||    
T  2230127 gaatgaaaaattgagtgaatggatggtattggatgcaatgggttccatcac-----attccatttcattcattttttacaaaaccaaa 2230209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 2230242 - 2230279
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2230242 attccattccaccactctccatcaatccaagcatagcc 2230279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 29765266 - 29765337
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| ||||| | ||||||||  ||| ||||||||||| |||| ||||||||| |||||||||||||    
T  29765266 tggtattggatggaattgattccatcatgctccattccattcca-ttatgttttacaaagccaaacaatggaa 29765337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 52286126 - 52286190
Alignment:
Q  181 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 245  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  52286126 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 52286190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 23407964 - 23407925
Alignment:
Q  126 tctattccattccaccactctccatcaatccaaacatagc 165  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  23407964 tctattccattccaccactctctaccaatccaaacatagc 23407925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 14567930 - 14567854
Alignment:
Q  25 tggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||||||| |||||| |||||||   | || |||||| |||||| | ||||| |||| |||||||||||||    
T  14567930 tggatggtattggatggaatgagttccattgtattccattccactccattcactttttgcaaatccaaacaatggaa 14567854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 23466679 - 23466643
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatagc 165  Q
    ||||||||||||||||||| | |||||||||||||||    
T  23466679 attccattccaccactctctaccaatccaaacatagc 23466643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 25909424 - 25909352
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| |||||| ||||||| | | |  ||| ||||||||| | || |||||||||||||||||||||    
T  25909424 tggtattggatggaatgagttccattatatttcatttcattccattcacttattacaaaaccaaacaatggaa 25909352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 44137 - 44300
Alignment:
Q  1 tgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||| |||||| ||| |||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  44137 tggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatgg 44236  T
Q  100 aagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
    || |||||| |    | |||  ||| || ||||||||||||||||||||||||||||||||||||||    
T  44237 aa-tatggatc--tatcccactccattccattccattccaccactctccatcaatccaaacatagcc 44300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 77858 - 78021
Alignment:
Q  1 tgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||| |||||| ||| |||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  77858 tggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatgg 77957  T
Q  100 aagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
    || |||||| |    | |||  ||| || ||||||||||||||||||||||||||||||||||||||    
T  77958 aa-tatggatc--tatcccactccattccattccattccaccactctccatcaatccaaacatagcc 78021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 3121328 - 3121182
Alignment:
Q  12 aaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaac 110  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||  |||||| ||||||||||||||        ||||     
T  3121328 aaaatttggtttaatggatggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaat--------ggaat 3121237  T
Q  111 atggttccatcccactctattccattccaccactctccatcaatccaaacatagc 165  Q
    ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3121236 atggttttatcccactccattccattccaccactctccatcaatccaaacatagc 3121182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 35292149 - 35292001
Alignment:
Q  8 aatgaaaatttgg-ttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatg 106  Q
    ||||||||||||| ||||||| ||||||||||  ||||| ||| |||||||||| |||||||||||||  |||||| ||||||||||||||        |    
T  35292149 aatgaaaatttggcttaatgggtggtattggattgaatgagttacatcacactccattccattccattccttttttgcaaaaccaaacaat--------g 35292058  T
Q  107 gaacatggttccatcccactctattccattccaccactctccatcaatccaaacata 163  Q
    ||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  35292057 gaatatggttttatcccactccattccattccaccactctccatcaatccaaacata 35292001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 50859278 - 50859126
Alignment:
Q  1 tgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||| ||||||| ||||||| ||| ||| |||||||||| ||||||  ||||||||||||| ||||||| ||| |  |||||||||||||||||||||      
T  50859278 tgggaggaatgacaatttggctaaatgggtggtattggatggaatgaattccatcacactccattccatcccactctttttttacaaaaccaaacaat-- 50859181  T
Q  100 aagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaac 160  Q
          |||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||    
T  50859180 ------ggaacatgcttccatcccactccattccattccaccactcttcatcaatcaaaac 50859126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 41223714 - 41223838
Alignment:
Q  34 ttggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattcc 133  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||   | |||     ||| |  ||||||||| |||||    
T  41223714 ttggatggaatgggttccatcacactccattccattccattcattttttacataaccaaacaatg---ggatg-----tggatatatcccactccattcc 41223805  T
Q  134 attccaccactctccatcaatccaaacatagcc 166  Q
    |||||| ||||||||||||||||||||||||||    
T  41223806 attccatcactctccatcaatccaaacatagcc 41223838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 35033864 - 35033998
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| |||||| ||||||||||| || |||||||||||||    |||| |||||||||||||||||| | ||  || |  ||||| |||| ||     
T  35033864 tggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaa-tctg--actttattccaacccattcc 35033960  T
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35033961 attccattccaccactctccatcaatccaaacatagcc 35033998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 18895213 - 18895337
Alignment:
Q  170 gaggtgcactctggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgccac--aaaattgtgtgaggcatgt 267  Q
    |||| |||||||| |||||||| ||||| || ||||  ||||||||| ||||| || ||||||| ||||||||||||||  ||||||||||||| |||||    
T  18895213 gaggcgcactctgactatttttgaattcgttctcaacctctaattgtcgccaccttctcaccatcttctcaaatgccactaaaaattgtgtgagacatgt 18895312  T
Q  268 tgtattttctgcaatctctcccaaa 292  Q
    ||| ||| ||||||| |||||||||    
T  18895313 tgtttttcctgcaatatctcccaaa 18895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 46944128 - 46944056
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  46944128 tggtattggatggaatgagttccatcacactccattccattccattcattttttacataaccaaacaatggaa 46944056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 48084793 - 48084633
Alignment:
Q  1 tgggtggaatgaaaatttggttaatgga-tggtattggaaggaatgggttccatcacactctattccattccattt-----attttttacaaaaccaaac 94  Q
    |||| |||||||||| ||||||||  || |||||||||| | |||| ||||||| | |||| ||||||||| |||      |||||||||||||||||||    
T  48084793 tggggggaatgaaaaattggttaaatgagtggtattggatgaaatgagttccataagactccattccattcaattctattaattttttacaaaaccaaac 48084694  T
Q  95 aatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacata 163  Q
    |||||||   ||     ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  48084693 aatggaa---tg-----tggtttcatcccactccattccattccaccactctccatcaatccaaacata 48084633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 21263630 - 21263702
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| ||||||||||||||||||||| || |||||||||   |||||||||||||||||||||||||    
T  21263630 tggtattggatggaatgggttccatcacactccatcccattccatcccttttttacaaaaccaaacaatggaa 21263702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 22405118 - 22405046
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  22405118 tggtattggatggaatgagttccatcacactccattccattccatcctttttttacaaaaccaaacaatggaa 22405046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 31227804 - 31227714
Alignment:
Q  6 ggaatgaaaatttggttaatgga-tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaaca 95  Q
    |||||||||| ||||||||  || |||||||||| ||||||  ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  31227804 ggaatgaaaaattggttaaatgagtggtattggatggaatgatttccatcacacttcattccattccattcattttttacaaaaccaaaca 31227714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 4292687 - 4292759
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| |||||| |||||||||||| | |||||||||||||  |||||| ||||||||||||||||||    
T  4292687 tggtattggatggaatgagttccatcacacaccattccattccattacttttttgcaaaaccaaacaatggaa 4292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 13779332 - 13779289
Alignment:
Q  115 ttccatcccactctattccattccaccactctccatcaatccaa 158  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  13779332 ttccatcccattccattccattccaccactctccatcaatccaa 13779289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 4342109 - 4342147
Alignment:
Q  63 ttccattccatttattttttacaaaaccaaacaatggaa 101  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  4342109 ttccattccattacttttttacaaaaccaaacaatggaa 4342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 41809950 - 41810016
Alignment:
Q  40 ggaatgggttccatcacactctattccattccatt----ta-ttttttacaaaaccaaacaatggaa 101  Q
    |||||||||||||||||| || ||||||||| |||    || |||||||||||||||||||||||||    
T  41809950 ggaatgggttccatcacattccattccattcaattccactatttttttacaaaaccaaacaatggaa 41810016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 11617345 - 11617182
Alignment:
Q  1 tgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||| ||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  11617345 tggggggaatgaaaatttggcttaatgggtggtattggatggaatgagttccatcacactccattccattccattcattttttgcaaaaccaaacaatgg 11617246  T
Q  100 aagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
    || |||||    |  | |||  ||| || ||||||||||||||||||||||||||||||||||||||    
T  11617245 aa-tatgg--ttttatcccactccattccattccattccaccactctccatcaatccaaacatagcc 11617182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 4943609 - 4943475
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||| |||||  |    | |||  ||| |||    
T  4943609 tggtattggatggaatgggttccatcacactccattccattccatcccttttttacaaaaccaaacaatggaa-tatgg--ctccatcccactccattct 4943513  T
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  4943512 attccattccaccactcaccaccaatccaaacatagcc 4943475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7506002 - 7506103
Alignment:
Q  1 tgggtggaatgaaaatttggttaatgga-tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||| |||||| ||| ||||||||  || |||||||||| ||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7506002 tggggggaatggaaaattggttaaatgagtggtattggatggaattgattccatcacactctatttcattccattaattttttacaaaaccaaacaatgg 7506101  T
Q  100 aa 101  Q
    ||    
T  7506102 aa 7506103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 9159522 - 9159446
Alignment:
Q  23 aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    ||||| |||||||||| |||||||||||||||||| || ||||| |||||||  |||||||||||||||||||||||||    
T  9159522 aatgggtggtattggatggaatgggttccatcacattccattcctttccatt--ttttttacaaaaccaaacaatggaa 9159446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 30084982 - 30084910
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| |||||| ||||||||||| || |||||||||||||    |||| ||||||||||||||||||    
T  30084982 tggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaa 30084910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 30084892 - 30084858
Alignment:
Q  132 ccattccaccactctccatcaatccaaacatagcc 166  Q
    |||||||||||||||||||||||||||||||||||    
T  30084892 ccattccaccactctccatcaatccaaacatagcc 30084858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29293274 - 29293199
Alignment:
Q  1 tgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattccattt 75  Q
    |||| |||||||||||||| || |||| |||| |||||| ||| ||||||||||| |||||  |||||||||||||    
T  29293274 tggggggaatgaaaatttgatttaatgaatggcattggatggagtgggttccatcccactccgttccattccattt 29293199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 41483544 - 41483507
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    |||||||||||||||  |||||||||||||||||||||    
T  41483544 attccattccaccacattccatcaatccaaacatagcc 41483507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 36657620 - 36657779
Alignment:
Q  1 tgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggttccatcacactctattccattcca-tttattttttacaaaaccaaacaatg 98  Q
    |||||||| ||||||| ||||||| || ||||||||||| ||||||||||||||||||||   || ||||||| ||| |||||||||||||||||||       
T  36657620 tgggtggattgaaaatctggttaaatgaatggtattggatggaatgggttccatcacacttcttttcattccatttttttttttacaaaaccaaaca--- 36657716  T
Q  99 gaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
         |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||    
T  36657717 -----atggaacatggttccatcccaccccattccattccatcactctccatcaatccaaatatagcc 36657779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 23417263 - 23417387
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| |||||||||||||||| |||| || ||||||||||  |||||||||||||||||||        ||||||||||||||||||||||       
T  23417263 tggtattggatggaatgggttccatcatactccatgccattccattccttttttacaaaaccaaaca--------atggaacatggttccatcccac--- 23417351  T
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
      ||||||||| ||||||||||||||||||||||||||    
T  23417352 --tccattccatcactctccatcaatccaaacatagcc 23417387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 19625499 - 19625367
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| |||||  ||||||||||| || |||||||||||||   ||||| ||||||||||||||| || | ||  ||    |||||||||| ||     
T  19625499 tggtattggatggaattagttccatcacattccattccattccattacatttttgcaaaaccaaacaatgaaa-tctg--actctattccatcccattcc 19625403  T
Q  129 attccattccaccactctccatcaatccaaacatag 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  19625402 attccattccaccactctccatcaatccaaacatag 19625367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 5925167 - 5925250
Alignment:
Q  18 tggttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||| |||| ||| ||||||| ||||||| |||||||| | |||||||||| |||| || ||||||||||||||||||||||||    
T  5925167 tggtgaatgaatgatattggatggaatggattccatcatattctattccataccatatactttttacaaaaccaaacaatggaa 5925250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 25029729 - 25029793
Alignment:
Q  181 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 245  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  25029729 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 25029793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 29428958 - 29428919
Alignment:
Q  62 attccattccatttattttttacaaaaccaaacaatggaa 101  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  29428958 attccattccattcattttttacaaatccaaacaatggaa 29428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 261798 - 261867
Alignment:
Q  31 gtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    ||||| || ||||||| ||||||||||  | |||||||||||| | |||||||||||| ||||||||||||    
T  261798 gtatttgatggaatggattccatcacatcccattccattccatct-ttttttacaaaatcaaacaatggaa 261867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 12633495 - 12633429
Alignment:
Q  40 ggaatgggttccatcacactctattccattccat----ttattt-tttacaaaaccaaacaatggaa 101  Q
    |||||| |||||||||||||| | ||||||||||    |||||| ||||||||||||||||||||||    
T  12633495 ggaatgagttccatcacactccactccattccattccattatttgtttacaaaaccaaacaatggaa 12633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 42025397 - 42025526
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||       |  |||||||||     
T  42025397 tggtattggatggaatgggttccatcacactccattcaattccattcattttttacaaaaccaaacaatggaa-tatgga-------tatatcccactcc 42025488  T
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42025489 attccattccatcactctccatcaatccaaacaaagcc 42025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 38679847 - 38679689
Alignment:
Q  6 ggaatgaaaatttgg-ttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagta 104  Q
    ||||||||||||||| ||||||  | |||||| | |||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||  |    
T  38679847 ggaatgaaaatttggcttaatgagtagtattgaatggaatgagttccatcacactccattccattctattcattttttacaaaaccaaacaatggaa-ca 38679749  T
Q  105 tggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
    ||  |  |  |  ||  |||||| ||||||||||| ||||||||||||||||||||||||||    
T  38679748 tg--attttatctcactccactccattccattccatcactctccatcaatccaaacatagcc 38679689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 34924794 - 34924922
Alignment:
Q  34 ttggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattcc 133  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| | | ||| | ||  | |||  ||| || |||||    
T  34924794 ttggatggaatgggttccatcacactccattccattccattcattttttacataaccaaacaatggga-tgtgg-atat-atcccactccattccattcc 34924890  T
Q  134 attccaccactctccatcaatccaaacatagc 165  Q
    |||||| |||||||||||||||||||||||||    
T  34924891 attccatcactctccatcaatccaaacatagc 34924922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 14112385 - 14112520
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttac-aaaaccaaacaatggaagtatggaacatggttccatcccactc 127  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| | | ||| | ||  | |||  ||| ||    
T  14112385 tggtattggatggaatcggttccatcacactctattccattccattcattttttactataaccaaacaatggga-tgtgg-atat-atcccactccattc 14112481  T
Q  128 tattccattccaccactctccatcaatccaaacatagcc 166  Q
     ||||||||||| ||||||||||||||||||||||||||    
T  14112482 cattccattccatcactctccatcaatccaaacatagcc 14112520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 30800270 - 30800196
Alignment:
Q  23 aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaat 97  Q
    |||| ||||||||||| |||||| |||||||||||||||||| ||||||| |  ||||||||||||| |||||||    
T  30800270 aatgaatggtattggatggaatgagttccatcacactctatttcattccactccttttttacaaaactaaacaat 30800196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 28873761 - 28873829
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaat 97  Q
    |||||||||| ||||| ||||||||||||| | |||||||| ||||  |||||||||||||||||||||    
T  28873761 tggtattggatggaataggttccatcacacaccattccatttcattccttttttacaaaaccaaacaat 28873829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10354366 - 10354208
Alignment:
Q  1 tgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||| ||||||||||||||| ||||||| |||||||||| |||||| ||| |||| ||||| |||||||||||||  |||||| ||||| ||||||        
T  10354366 tggggggaatgaaaatttggcttaatgggtggtattggatggaatgagtttcatcgcactccattccattccattccttttttgcaaaatcaaaca---- 10354271  T
Q  100 aagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 166  Q
        || ||| ||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  10354270 ----atagaatatggttttatcctactccattccattccaccactctccatcaatccaaacatagcc 10354208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 7444724 - 7444858
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| | ||| | ||  | |||  ||| ||     
T  7444724 tggtattggatggaatgggttccatcacactccattccattccattcattttttagaaaaccaaacaatggaa-tgtgg-atat-atcccactccattcc 7444820  T
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  7444821 attccattccatcactctccatcaatccaaacaaagcc 7444858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 28219100 - 28219028
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  28219100 tggtattggatggaatgggttccatcacactccattccattccatcccttttttacaaaaccaaacaatggaa 28219028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 6476806 - 6476769
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6476806 attccattccaccactctccatcaatccaaacatagcc 6476769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 28199261 - 28199393
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| |||||  ||||||||||| || |||| ||||||||    |||| |||||||||||||||||| | ||  ||    |||||||||| ||     
T  28199261 tggtattggatggaataagttccatcacattccattcgattccattacaattttccaaaaccaaacaatggaa-tctg--actctattccatcccattcc 28199357  T
Q  129 attccattccaccactctccatcaatccaaacatagc 165  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28199358 attccattccaccactct-catcaatccaaacatagc 28199393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 44246413 - 44246347
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgga 100  Q
    |||||||||| |||||| |||||||||||||| ||||||||||     |||| |||||||||||||||||||    
T  44246413 tggtattggatggaatgagttccatcacactccattccattcc-----ttttatacaaaaccaaacaatgga 44246347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 1499269 - 1499338
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttt-tacaaaaccaaacaat 97  Q
    |||||||||| ||||||  ||||||||||||  |||||||||||||| ||||| ||||||| ||||||||    
T  1499269 tggtattggatggaatgaattccatcacactgcattccattccatttttttttatacaaaagcaaacaat 1499338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 18000080 - 18000115
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatag 164  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18000080 attccattccatcactctccatcaatccaaacatag 18000115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 44246336 - 44246301
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatag 164  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44246336 attccattccatcactctccatcaatccaaacatag 44246301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 17999973 - 18000035
Alignment:
Q  9 atgaaaatttgg-ttaatggatggtattggaaggaatgggttccatcacactctattccattc 70  Q
    |||||||||||| ||||||  ||||||||||  |||||| ||||||||||||| |||||||||    
T  17999973 atgaaaatttggcttaatgagtggtattggatagaatggattccatcacactccattccattc 18000035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 56998 - 56928
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 99  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  56998 tggtattggatggaattggttccatcacactctattccattccattcattttttacataaccaaacaatgg 56928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 56901 - 56864
Alignment:
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  56901 attcccttccatcactctccatcaatccaaacatagcc 56864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 38620 - 38739
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 128  Q
    |||||||||| ||||||||||||||||||||| ||||||||||     |||||||||||||||||||        ||||||||||||||||||||||       
T  38620 tggtattggatggaatgggttccatcacactccattccattcc-----ttttttacaaaaccaaaca--------atggaacatggttccatcccac--- 38703  T
Q  129 attccattccaccactctccatcaatccaaacatagcc 166  Q
      ||||||||| ||||||||||||||| ||||||||||    
T  38704 --tccattccatcactctccatcaatcaaaacatagcc 38739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 12470 - 12545
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattcc---atttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| ||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||||||    
T  12470 tggtattggatggaatgggttccatcacactccattccattccattattttttttttacaaaaccaaacaatggaa 12545  T

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Target: scaffold0227 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 238 - 310
Alignment:
Q  29 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 101  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||    
T  238 tggtattggatggaatgggttccatcacactccattccattccatcccatttttacaaaaccaaacaatggaa 310  T

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Target: scaffold0127 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 30196 - 30287
Alignment:
Q  40 ggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattcca 139  Q
    |||||||||||||||||| || |||||||||||||  |||||||||||||||||||        ||||||||||| |||||||||||| |||||||||||    
T  30196 ggaatgggttccatcacattccattccattccattatttttttacaaaaccaaaca--------atggaacatggctccatcccactccattccattcca 30287  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 33870249 - 33870203
Alignment:
Q  202 tcaatttctaattgtggccactttttcaccatattctcaaatgccac 248  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||    
T  33870249 tcaacttctaattgtcgccactttttcaccattttctcaaatgccac 33870203  T

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