View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_high_17 (Length: 253)
Name: NF19024_high_17
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 7741341 - 7741508
Alignment:
| Q |
67 |
gttcaccattttgtattccttgatgcctttatcatcttctacaagttactgtttttaatatcacttcttttaattaatatccaatcaatcgataaagtat |
166 |
Q |
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| T |
7741341 |
gttcaccattttgtattccttggtgcctttatcatcttctacaacttactgtttttaatatcacttcttttaattaatatccaatcaatcgataaagtat |
7741440 |
T |
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| Q |
167 |
tatttgcaaatctcttccaacttgtttgctacaggtttgttttactatagcaaagaaaatgacaggca |
234 |
Q |
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| T |
7741441 |
tatttgcaaatctcttccatcttgtttgctacaggtttgttttactatagcaaagaaaatgacaggca |
7741508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 36657510 - 36657353
Alignment:
| Q |
68 |
ttcaccattttgtattccttgatgcctttatcatcttctacaagttactgttttt-aatatcacttcttttaattaatatccaatcaatcgataaagtat |
166 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
36657510 |
ttcaccgttttgtattccttggtgcctttatcatcttctacaacttattgttttttaataccacttcttttaattaatatc-aatcaaccgataaagtat |
36657412 |
T |
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| Q |
167 |
tatttgcaaatctcttccaacttgtttgctacaggtttgttttactatagcaaagaaaa |
225 |
Q |
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| T |
36657411 |
tatttgcaaatctcttccatcttgtttgctacaggtttgttttactatagcaaagaaaa |
36657353 |
T |
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