View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_high_24 (Length: 207)
Name: NF19024_high_24
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 1058787 - 1058599
Alignment:
| Q |
1 |
ataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058787 |
ataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattc |
1058688 |
T |
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| Q |
101 |
cagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1058687 |
cagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattca |
1058599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1071606 - 1071422
Alignment:
| Q |
1 |
ataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattc |
100 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||| | || || |||||| ||||||||| ||| |||| ||||||||||||||| |||| |
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| T |
1071606 |
ataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattctgaatactctgcaaaaggtgataatcttattc |
1071507 |
T |
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| Q |
101 |
cagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccata |
185 |
Q |
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|| ||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
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| T |
1071506 |
caactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacggttctcaagggatccaccata |
1071422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 1065879 - 1065691
Alignment:
| Q |
1 |
ataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattc |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||| ||||||||||||| || | ||||||||||||||| |||| |
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| T |
1065879 |
ataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattctgcatactccgcaaaaggtgataatcttattc |
1065780 |
T |
|
| Q |
101 |
cagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
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|| ||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| || || |||||||||||| |
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| T |
1065779 |
caactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgacagcggttctccagagacccaccatattca |
1065691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 1053522 - 1053334
Alignment:
| Q |
1 |
ataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||| ||| || ||| | ||||||||||||| | |||| |
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| T |
1053522 |
ataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatctccaaatttttcaaaaggtgataattttattc |
1053423 |
T |
|
| Q |
101 |
cagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
| |
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|| ||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||||| || ||||||| |||||||||||| |
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| T |
1053422 |
caactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttccaccatattca |
1053334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 1033868 - 1033689
Alignment:
| Q |
10 |
ttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctat |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| |||||| | |||||| || ||| | |||||||||||||||||||||| ||| | |
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| T |
1033868 |
ttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactcttt |
1033769 |
T |
|
| Q |
110 |
ctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
| |
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|||| ||||||||||| ||||||| |||||||||||||| ||| |||||||| ||||||||||| |||||||||||| |
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| T |
1033768 |
ctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatccaccatattca |
1033689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 1044255 - 1044076
Alignment:
| Q |
10 |
ttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctat |
109 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| ||||||| |||||| | | |||||||||||||| ||||||||||| |||||||||| | ||| |
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| T |
1044255 |
ttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttat |
1044156 |
T |
|
| Q |
110 |
ctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||| || |||||||| ||||| ||||| ||||| |||||| |
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| T |
1044155 |
ctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgagggatccaccgtattca |
1044076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 1640685 - 1640853
Alignment:
| Q |
7 |
tatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttc |
106 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||| ||||| |||||| |||||||| ||||||||| ||||| ||||||||||||||| || |
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| T |
1640685 |
tatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataatctaattccaactc |
1640784 |
T |
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| Q |
107 |
tatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaaggg |
175 |
Q |
| |
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| T |
1640785 |
tttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaaggg |
1640853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 1046847 - 1046659
Alignment:
| Q |
1 |
ataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| | | ||||| |||||| |||||||| | | |||||||||||||||| | | |||| |
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|
| T |
1046847 |
ataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttattc |
1046748 |
T |
|
| Q |
101 |
cagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
| |
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|| ||| || ||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||| | |||||||||||| |
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|
| T |
1046747 |
caactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattca |
1046659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 44171260 - 44171358
Alignment:
| Q |
91 |
aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
| |
|
|||||||||||| | | ||||| ||||||||||| |||||||||||||||||||||| ||| || ||| |||||||| ||||| |||||||||||| |
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|
| T |
44171260 |
aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattca |
44171358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 44191556 - 44191654
Alignment:
| Q |
91 |
aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggagccaccatattca |
189 |
Q |
| |
|
|||||||||||| | | ||||| ||||||||||| |||||||||||||||||||||| ||| || ||| |||||||| ||||| |||||||||||| |
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| T |
44191556 |
aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattca |
44191654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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