View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_high_7 (Length: 454)

Name: NF19024_high_7
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_high_7
NF19024_high_7
[»] chr1 (3 HSPs)
chr1 (1-439)||(36293621-36294059)
chr1 (82-206)||(36282918-36283042)
chr1 (82-208)||(36288262-36288388)


Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 36293621 - 36294059
Alignment:
Q  1 tgttatattcttttgatattcaagcaagtttttagacaacaacttgaggccatttattgaatgaatttttcatttgcaccaatttcaaaggcaaacacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36293621 tgttatattcttttgatattcaagcaagtttttagacaacaacttgaggccatttattgaatgaatttttcatttgcaccaatttcaaaggcaaacacct 36293720  T
Q  101 aatccaagggatcggtactggcgtcgttccccctgtcctggatcttgatctcctagatgaagttattcaggtagcttgcaacactaatacactggtattc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36293721 agtccaagggatcggtactggcgtcgttccccctgtcctggatcttgatctcctagatgaagttattcaggtagcttgcaacactaatacactggtattc 36293820  T
Q  201 aattatcattaattttgatccataaacttatcattaatttctatcctaagtaagaacaatatgcttgctgaacttttgaactgatacttggttgcgcata 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36293821 aattatcattaattttaatccataaacttatcattaatttctatcctaagtaagaacaatatgcttgctgaacttttgaactgatacttgtttgcgcata 36293920  T
Q  301 atctaagtaattaaatcaagcctaaatgtagctcttcactattatcgctttctcatactatttgacacttgaaagttgtttttcgcaatcgtatccaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36293921 atctaagtaattaaatcaagcctaaatgtagctcttcactattatcgctttctcatactatttgacacttgaaagttgtttttcgcaatcgtatccaaat 36294020  T
Q  401 cttgaaaagctttgtctcaccaggtcacgcacatatatt 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36294021 cttgaaaagctttgtctcaccaggtcacgcacatatatt 36294059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 36282918 - 36283042
Alignment:
Q  82 atttcaaaggcaaacacctaatccaagggatcggtactggcgtcgttccccctgtcctggatcttgatctcctagatgaagttattcaggtagcttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||||||  |||||||||||||||||||||||||||| |||  |||    
T  36282918 atttcaaaggcaaacacctaatccaagggatcggtgctggtatcgttccccctatcctggaagttgatctcctagatgaagttattcaggttgctctcaa 36283017  T
Q  182 cactaatacactggtattcaattat 206  Q
     ||||||||| ||| ||||||||||    
T  36283018 tactaatacattggcattcaattat 36283042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 36288262 - 36288388
Alignment:
Q  82 atttcaaaggcaaacacctaatccaagggatcggtactggcgtcgttccccctgtcctggatcttgatctcctagatgaagttattcaggtagcttgcaa 181  Q
    ||||||||||||| || | |||||||||||||||| ||||  || |||| ||||| |||||  |||||||||||||||||||||||||||||||| ||||    
T  36288262 atttcaaaggcaatcatcgaatccaagggatcggtgctggtatcattcctcctgttctggaagttgatctcctagatgaagttattcaggtagctcgcaa 36288361  T
Q  182 cactaatacactggtattcaattatca 208  Q
    |||||||||| | ||||||||||||||    
T  36288362 cactaatacattagtattcaattatca 36288388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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