View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_high_9 (Length: 400)

Name: NF19024_high_9
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_high_9
NF19024_high_9
[»] chr1 (10 HSPs)
chr1 (18-392)||(36988936-36989310)
chr1 (112-265)||(12804761-12804914)
chr1 (120-265)||(50789077-50789222)
chr1 (120-226)||(28496367-28496473)
chr1 (112-265)||(12774660-12774813)
chr1 (112-263)||(42286842-42286993)
chr1 (117-219)||(4160143-4160245)
chr1 (21-97)||(31644217-31644293)
chr1 (162-254)||(31644361-31644453)
chr1 (153-250)||(52371466-52371563)
[»] chr8 (3 HSPs)
chr8 (65-217)||(33186506-33186658)
chr8 (66-212)||(5788927-5789073)
chr8 (155-237)||(3271561-3271643)
[»] chr2 (4 HSPs)
chr2 (72-250)||(38896067-38896245)
chr2 (108-250)||(5435662-5435804)
chr2 (108-253)||(42898033-42898178)
chr2 (153-237)||(17858951-17859035)
[»] chr7 (2 HSPs)
chr7 (135-263)||(44151073-44151201)
chr7 (110-223)||(40749155-40749268)
[»] chr4 (1 HSPs)
chr4 (150-250)||(30518436-30518536)
[»] chr3 (2 HSPs)
chr3 (72-250)||(12105848-12106027)
chr3 (72-250)||(46987920-46988099)
[»] chr5 (2 HSPs)
chr5 (153-250)||(12938238-12938335)
chr5 (153-250)||(12952387-12952484)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 36989310 - 36988936
Alignment:
Q  18 ccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989310 ccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgtt 36989211  T
Q  118 ttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989210 ttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagc 36989111  T
Q  218 cattagtgttgttggtgatagtgctatcacttcagcacttggatctgtgccaaacatattaaacacgttaatatgtactatgtgtgaaacaaagnnnnnn 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  36989110 cattagtgttgttggtgatagtgctatcacttcagcacttggatctgtgccaaacatattaaacacgttaatatgtactatgtgtgaaacaaagaaaaaa 36989011  T
Q  318 nnnnnnntaggagtcaacaaaagtcaacagtgtacaacaattattggcaagacaataattgagtttcttcttctc 392  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989010 gaaaaaataggagtcaacaaaagtcaacagtgtacaacaattattggcaagacaataattgagtttcttcttctc 36988936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 12804761 - 12804914
Alignment:
Q  112 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtt 211  Q
    |||| ||||||||||||||||| |||||||||||||  || ||||| | |||||| || |||||||| || || | ||| | ||||||||| ||||||||    
T  12804761 tttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttgaaaccctttttgacacacttcacatacaaatctgtt 12804860  T
Q  212 tgtagccattagtgttgttggtgatagtgctatcacttcagcacttggatctgt 265  Q
    ||| |||||||| ||  |||| |||||||||||||| || |||  |||||||||    
T  12804861 tgttgccattagggtctttggagatagtgctatcacctctgcatctggatctgt 12804914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 265
Target Start/End: Original strand, 50789077 - 50789222
Alignment:
Q  120 agcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagcca 219  Q
    |||||||||||||||||||||||||||| ||| || || |||||||| |||||||| || || ||||| ||||  ||||| |  || |||||||| ||||    
T  50789077 agcttccaaggcaagttgtgtcctcttctgtgaagctgtagattttgctctctttggaaccctttgttgcatacctcacaaataaacctgtttgttgcca 50789176  T
Q  220 ttagtgttgttggtgatagtgctatcacttcagcacttggatctgt 265  Q
    |||| ||  | || |||||||||||||| || |||  |||||||||    
T  50789177 ttagggtcttgggagatagtgctatcacctctgcatctggatctgt 50789222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 28496367 - 28496473
Alignment:
Q  120 agcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagcca 219  Q
    |||||||| || | ||||||||||||||  || |||||||| ||||| |||||||| || || ||||| ||||||||||| | |||||||||||| ||||    
T  28496367 agcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttggaaccctttgttgcatatttcacagatgaatctgtttgttgcca 28496466  T
Q  220 ttagtgt 226  Q
    | |||||    
T  28496467 tgagtgt 28496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 265
Target Start/End: Complemental strand, 12774813 - 12774660
Alignment:
Q  112 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtt 211  Q
    |||| ||||||||||||||||| |||||||||||||  || ||||| | |||||| || ||||| || || || |  || | ||||||||| ||||||||    
T  12774813 tttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttggaaccctttttggcacacttcacatacaaatctgtt 12774714  T
Q  212 tgtagccattagtgttgttggtgatagtgctatcacttcagcacttggatctgt 265  Q
    ||| ||||||||  |  | || ||||||||||||||||| |||  |||||||||    
T  12774713 tgttgccattaggctcttgggagatagtgctatcacttctgcatctggatctgt 12774660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 42286993 - 42286842
Alignment:
Q  112 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtt 211  Q
    |||| |||||||||||||| |  |||||||||||||  || |||||||||||||| || |||||||| || || || || |  |||||||  ||||| ||    
T  42286993 tttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttgaaaccctttattgcaaacctcacatataaatctatt 42286894  T
Q  212 tgtagccattagtgttgttggtgatagtgctatcacttcagcacttggatct 263  Q
    ||| |||||||| ||  | || ||||||||||||||||| |||  |||||||    
T  42286893 tgttgccattagagtcttgggagatagtgctatcacttctgcatctggatct 42286842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 4160245 - 4160143
Alignment:
Q  117 tttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtag 216  Q
    ||||||||||| ||||| || ||||||||    || || ||||||||||| |||||||||||||| |||||||| || ||||| | ||| |||||||| |    
T  4160245 tttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaacctttgttacaaatctcacaaatgaacctgtttgttg 4160146  T
Q  217 cca 219  Q
    |||    
T  4160145 cca 4160143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 31644217 - 31644293
Alignment:
Q  21 gtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaacataaaccctctttctaat 97  Q
    |||||||| ||||| || |||| ||||||||| || ||||||||||| || |||||||||||| | |||||| ||||    
T  31644217 gtaagatctccaagagcccttgaagggttatgatgaacacatgaaggctctggacaaacataagctctctttttaat 31644293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 31644361 - 31644453
Alignment:
Q  162 ttttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttcagca 254  Q
    ||||| |||||||||||||||||||| || || ||||| || ||||| ||||| |  | ||||||  |||||||||  |||||||||||||||    
T  31644361 ttttgatctctttgaaaacccttgttgcagatctcacacacaaatctatttgttgttaatagtgtctttggtgataaagctatcacttcagca 31644453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 52371563 - 52371466
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| ||||||||| |||| ||||| | || | |||||||||  | |||||||||    
T  52371563 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgcttgttgccatcaatggttttggtgataaagatatcacttc 52371466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 33186658 - 33186506
Alignment:
Q  65 aggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattt 164  Q
    |||||||||||||||||||||||| || |||||||||  ||| | ||||||| | || ||||| || |  || ||||||||||  || |||||||||||     
T  33186658 aggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattc 33186559  T
Q  165 tggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagc 217  Q
    || ||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  33186558 tgatctctttgaaaccctttgttacatatttcacacacaaatctgtttgtagc 33186506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 5788927 - 5789073
Alignment:
Q  66 ggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagatttt 165  Q
    ||||| ||||| ||||| ||  |||||||||| |||  ||| ||||||||||| | |||||| || || || || ||||||| ||| |||||||||||||    
T  5788927 ggttctggacatacatatactttctttctaatctctttacttgttctttgtttcaacttccatggtaaattatgacctcttctgtgaagttgaagatttt 5789026  T
Q  166 ggtctctttgaaaacccttgttacatatttcacatacgaatctgttt 212  Q
    | ||||||||||| || ||||| || || ||||||| ||| ||||||    
T  5789027 gatctctttgaaaccctttgttgcagatctcacatatgaacctgttt 5789073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 3271561 - 3271643
Alignment:
Q  155 ttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgata 237  Q
    |||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||    
T  3271561 ttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgata 3271643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 38896067 - 38896245
Alignment:
Q  72 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 171  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| ||||| | ||| || |||||||||||||| || |    
T  38896067 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattttgatccc 38896166  T
Q  172 tttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||| ||||   ||| |||||||| |||||||||||||| ||||| | |||| |||||||||  | |||||||||    
T  38896167 tttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatgtttttggtgataaagatatcacttc 38896245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 5435662 - 5435804
Alignment:
Q  108 gttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatc 207  Q
    ||||||||||| ||||||||||| | ||| ||||| | ||| || |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||    
T  5435662 gttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatc 5435761  T
Q  208 tgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    ||||||| ||||| | || | |||||||||  | |||||||||    
T  5435762 tgtttgttgccatcaatggttttggtgataaagatatcacttc 5435804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 42898178 - 42898033
Alignment:
Q  108 gttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatc 207  Q
    |||||||| || | |||||| ||||| ||||||||||||   || ||||||||||| || ||||||||||| || |||||||| || ||||| | |||||    
T  42898178 gttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttgaaatcctttgttacagatctcacaaatgaatc 42898079  T
Q  208 tgtttgtagccattagtgttgttggtgatagtgctatcacttcagc 253  Q
    | ||||| ||||| |||||| |||| ||||  ||||| ||||||||    
T  42898078 tatttgttgccatcagtgtttttggcgataaggctataacttcagc 42898033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 17859035 - 17858951
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgata 237  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||    
T  17859035 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatgcttttggtgata 17858951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 44151073 - 44151201
Alignment:
Q  135 ttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtg 234  Q
    ||||| ||||||||||| |  |||||||| ||||| || |||||||||||||||||||| ||||| || ||||| ||||| ||||||| ||||||||| |    
T  44151073 ttgtgacctcttcggtgtaactgaagattctggtccctctgaaaacccttgttacatatctcacacacaaatctatttgttgccattaatgttgttggag 44151172  T
Q  235 atagtgctatcacttcagcacttggatct 263  Q
    ||| ||| | |||||||||| | ||||||    
T  44151173 ataatgcaaccacttcagcagtaggatct 44151201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 40749268 - 40749155
Alignment:
Q  110 tctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctg 209  Q
    |||||| ||||||||||| || | |||||| |||||||  || || |||||||| || |||||||| || || ||||| |||||||| || ||||||| |    
T  40749268 tctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttggaatcctttgttgcatatttcgcagacgaatcgg 40749169  T
Q  210 tttgtagccattag 223  Q
    || || ||||||||    
T  40749168 ttcgtggccattag 40749155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 30518436 - 30518536
Alignment:
Q  150 tgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcactt 249  Q
    ||||||||||||||||| |||||||||||||| ||   |||| ||||||| | |||||||||||||||||| |||||  |||||||||  ||||| ||||    
T  30518436 tgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataactt 30518535  T
Q  250 c 250  Q
    |    
T  30518536 c 30518536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 12106027 - 12105848
Alignment:
Q  72 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 171  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| | ||| | ||| || |||||||||||||| |  |    
T  12106027 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcc 12105928  T
Q  172 tttgaaaacccttgt-tacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||| |||| |  ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  12105927 tttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 12105848  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 46987920 - 46988099
Alignment:
Q  72 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 171  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| | ||| | ||| || |||||||||||||| |  |    
T  46987920 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcc 46988019  T
Q  172 tttgaaaacccttgt-tacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||| |||| |  ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  46988020 tttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 46988099  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 12938335 - 12938238
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  12938335 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 12938238  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 12952484 - 12952387
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  12952484 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 12952387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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