View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_low_1 (Length: 650)
Name: NF19024_low_1
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 640
Target Start/End: Original strand, 51294072 - 51294701
Alignment:
| Q |
18 |
cagggatgtatttccattatcataaaatactcatatttttgttgcattgcatgtggcatattcactttctttcctgtaggctataaatatgcactgctat |
117 |
Q |
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| T |
51294072 |
cagggatgtatttccattatcataaaatactcatatttttgttgcattgcatgtggcatattcactttctttcctgtaggctataaatatgcactgctat |
51294171 |
T |
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| Q |
118 |
tccaagcttgctacta---------------aaagaagatacctcacataataatataggttagcttagaggtcaagtattcttccaaaaatcatatctt |
202 |
Q |
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| T |
51294172 |
tccaagcttgctactaccataataccaactaaaagaagatacctcacataataatataggttagcttagaggtcaagtaatcttccaaaaatcatatctt |
51294271 |
T |
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| Q |
203 |
atagtgataatatgggaggcaagaagtcctcttccttttgtggtatgttgaagtcttgtttctcaagtggaggaagcagtagggatgattattactatta |
302 |
Q |
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| T |
51294272 |
atagtgataatatgggaggcaagaagtcctcttccttttgtggtatgttgaagtcttgtttctcaagtggaggaagcagtagggatgattattactatta |
51294371 |
T |
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| Q |
303 |
tgatgatgatggcagtagcagaaggatatttgcaagtgatgaagacagaggtcgttgggttgctgagcctggtattgacaagaaagcttctgctttcatt |
402 |
Q |
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| T |
51294372 |
tgatgatgatggcagtagcagaaggatatttgcaagtgatgaagacagaggtcgttgggttgctgagcctggtattgacaagaaagcttctgctttcatt |
51294471 |
T |
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| Q |
403 |
gctagattctatgccaaccgagccactgattctgagcaacaaattgcttcttgaaatttcattttaacttcttcgttcattcttgtttttcctaccaata |
502 |
Q |
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| T |
51294472 |
gctagattctatgccaaccgagccactgattctgagcaacaaattgcttcttgaaatttcattttaacttc----ttcattcttgtttttcctaccaata |
51294567 |
T |
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| Q |
503 |
atccccctccccaaatgtaaaatataatgttttctttatttggttgtagtcagttttataataatttactgcagttgttcttgatcagcgtttgattata |
602 |
Q |
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| T |
51294568 |
atccccctccccaaatgtaaaatataatgttttctttatttggttgtagtcagttttataataatttactgcagttgttcttgatcatcgtttgat---- |
51294663 |
T |
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| Q |
603 |
tatatatgatggtggtctagttctttcttttccctttg |
640 |
Q |
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| T |
51294664 |
tatatatgatggtggtctagttctttcttttccctttg |
51294701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 322 - 409
Target Start/End: Complemental strand, 19575032 - 19574945
Alignment:
| Q |
322 |
agaaggatatttgcaagtgatgaagacagaggtcgttgggttgctgagcctggtattgacaagaaagcttctgctttcattgctagat |
409 |
Q |
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||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
19575032 |
agaagaatgtttgcaagtgatgaagatagaggttgttgggttgctgagcctggtattgataggaaagcttctgatttcattgctagat |
19574945 |
T |
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