View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_low_10 (Length: 349)
Name: NF19024_low_10
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 330
Target Start/End: Original strand, 47955629 - 47955912
Alignment:
| Q |
50 |
ttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatatt |
149 |
Q |
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| T |
47955629 |
ttccttctccaattctgcaaaagccacgttaagcaattcatccaattttattatgttgatgtgaattacaatcacttccttcatcctaaaattgaatatt |
47955728 |
T |
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| Q |
150 |
tattatgtttagacatcaaacttcacgccttaaaagctaaggttttatctcagatttttccattaagccnnnnnnncattagatagaagataatccttgt |
249 |
Q |
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| T |
47955729 |
ttttatgttgag-catcaaacttcacgcctcaaaagctgaggttttatttcagttctttccattaatcc-atttttcactaggtagaagataatcattgt |
47955826 |
T |
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| Q |
250 |
tattgcttttccatattt-----tgttttatatttcctttaatccttctattaatccattttccactaaatagtatgaagcatgtg |
330 |
Q |
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| T |
47955827 |
tattccttttccatatttatttattttttatatttcatgtaatccttccattagtccattttccactaaatagtatgaagcatgtg |
47955912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 68 - 336
Target Start/End: Original strand, 32019445 - 32019718
Alignment:
| Q |
68 |
aaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatatttattatgtttagacatca |
167 |
Q |
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| T |
32019445 |
aaaagcaacattaagcaattcatccaactttattatgtcgatgtgaattaaaatcacttccttcatccaaaaattg-atatttattacgtatagacatca |
32019543 |
T |
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| Q |
168 |
aacttcacgccttaaaagctaaggttttatctcagatttttccattaagcc--------nnnnnnncattagatagaagataatccttgttattgctttt |
259 |
Q |
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| T |
32019544 |
aacttctcgcctcaaaagctaaggttttatctcaggtctttccattaagcctttttttttttttttcactaaatagaagatggtcattgttattgctttt |
32019643 |
T |
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| Q |
260 |
ccatattttgttttatatttcctttaatccttctattaatccattttccactaaatagtatgaagcatgtgtgagta |
336 |
Q |
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| T |
32019644 |
cc--atttttttttatatttcctttaatccttccattattccatttttcactaaatagtatggagcatgtgtgagta |
32019718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 38095172 - 38095338
Alignment:
| Q |
49 |
cttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatat |
148 |
Q |
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| T |
38095172 |
cttccttctctaattgtccaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaattgaatat |
38095271 |
T |
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| Q |
149 |
ttattatgtttagacatcaaacttcacgccttaaaagctaaggttttatctcagatttttccattaa |
215 |
Q |
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| T |
38095272 |
ttatcacgtttaggcatcaaacttcacgcctcaaaagctaaggttttatttcaggtctttccattaa |
38095338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 2758011 - 2757883
Alignment:
| Q |
49 |
cttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatat |
148 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||| |
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| T |
2758011 |
cttccttctccaattctacaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattaaaatcacttgcttcatccaaatattgaatat |
2757912 |
T |
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| Q |
149 |
ttattatgtttagacatcaaacttcacgc |
177 |
Q |
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| T |
2757911 |
ttattatgtttagacatcaaacttcacgc |
2757883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 26179317 - 26179448
Alignment:
| Q |
84 |
aattcatccaactttattatgttgatgtgaattaaaatcgcttccttcatcctaaaattgaatatttattatgtttagacatcaaacttcacgccttaaa |
183 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||| ||| |
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| T |
26179317 |
aattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaattgaatatctatcacgtttaggcatcaaacttcacgcctcaaa |
26179416 |
T |
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| Q |
184 |
agctaaggttttatctcagatttttccattaa |
215 |
Q |
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| T |
26179417 |
agctaaggttttatttcaggtctttccattaa |
26179448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 16427454 - 16427348
Alignment:
| Q |
229 |
tagatagaagataatccttgttattgcttttccatattt-----tgttttatatttcctttaatccttctattaatccattttccactaaatagtatgaa |
323 |
Q |
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|||||||| |||||| |||||||| |||||||||||| | ||||||||||| | ||||||||| |||| |||||||| |||||||||||||||| |
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| T |
16427454 |
tagatagaggataattattgttattctttttccatatttatttattttttatatttcttgtaatccttccattagtccatttttcactaaatagtatgaa |
16427355 |
T |
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| Q |
324 |
gcatgtg |
330 |
Q |
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||||||| |
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| T |
16427354 |
gcatgtg |
16427348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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