View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_low_11 (Length: 331)
Name: NF19024_low_11
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 3208711 - 3208386
Alignment:
| Q |
1 |
ccctcggaggaccctcctctcctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208711 |
ccctcggaggaccctcctctcctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaa |
3208612 |
T |
|
| Q |
101 |
ttcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208611 |
ttcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagctt |
3208512 |
T |
|
| Q |
201 |
ggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208511 |
ggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtg |
3208412 |
T |
|
| Q |
301 |
atgattccattgccttctgtgctcct |
326 |
Q |
| |
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|||||||||||||||| |||| |||| |
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| T |
3208411 |
atgattccattgccttttgtggtcct |
3208386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 3202716 - 3202422
Alignment:
| Q |
22 |
ctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtac |
121 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||| |
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| T |
3202716 |
ctttctttgaaagtggaattgcacttggtgcatttagtgcaattcaaaagggaatttttgttagttgttctgctggaaattcaggtccttttcatggtac |
3202617 |
T |
|
| Q |
122 |
tttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttggcgacgggacagaatatctt |
221 |
Q |
| |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||| |
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| T |
3202616 |
attggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcttggggatgggacggaatatctc |
3202517 |
T |
|
| Q |
222 |
ggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtgatgattccattgcctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
3202516 |
ggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatgcaggtgcaattaacacaagtgatgatttcattgcctt |
3202422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 3216630 - 3216325
Alignment:
| Q |
21 |
cctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggta |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||| ||||| |||||| |||||||| |
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| T |
3216630 |
cctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtcctgattatggta |
3216531 |
T |
|
| Q |
121 |
ctttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttggcgacgggacagaatatct |
220 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| || ||| ||||||| |||||| ||||| | ||||| | |
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| T |
3216530 |
caacgtctaatgaagcaccatggattctaactgttggtgctagcacaactgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatat |
3216431 |
T |
|
| Q |
221 |
tggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtgatgattccattgccttctgt |
320 |
Q |
| |
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|||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||| |
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| T |
3216430 |
tggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgt |
3216331 |
T |
|
| Q |
321 |
gctcct |
326 |
Q |
| |
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| |||| |
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| T |
3216330 |
ggtcct |
3216325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 3226532 - 3226373
Alignment:
| Q |
24 |
ttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtactt |
123 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||| ||||| |||||| || ||||||||||||| || |||||||| || |||||| ||| | ||| |
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| T |
3226532 |
ttctttgaagacccaattgcaattggtgcttttgctgcaactcaaaatggtgtttttgttagttgctctgctgcaaactctggtcctggatatagcactc |
3226433 |
T |
|
| Q |
124 |
tgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
183 |
Q |
| |
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| || |||||||| || ||||| || ||||||||||| |||||||||||||||||||||| |
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| T |
3226432 |
tctccaatgaagctccttggatcctcactgttggtgctagcacaattgacagaaaaattg |
3226373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 3221550 - 3221391
Alignment:
| Q |
24 |
ttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtactt |
123 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||| ||| | |||||| || ||||||||||||| || |||||||| || |||||| || | ||| |
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| T |
3221550 |
ttctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgcaaactccggtcctggatacagcactc |
3221451 |
T |
|
| Q |
124 |
tgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
183 |
Q |
| |
|
| || |||||||| || ||| | || ||||||||||||||||||||||| |||||||||| |
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| T |
3221450 |
tctccaatgaagctccttgggtcctcactgttggtgccagcacaattgatagaaaaattg |
3221391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 3231783 - 3231624
Alignment:
| Q |
24 |
ttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtactt |
123 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||| ||| | |||||| || ||||||||||||| || |||||||| || |||||| || | ||| |
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| T |
3231783 |
ttctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgcaaactctggtcctggatacagcactc |
3231684 |
T |
|
| Q |
124 |
tgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
183 |
Q |
| |
|
| || |||||||| || ||||| || ||||||||||| ||||||||||| |||||||||| |
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|
| T |
3231683 |
tttccaatgaagctccttggatcctcactgttggtgcaagcacaattgatagaaaaattg |
3231624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 3178363 - 3178415
Alignment:
| Q |
129 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaat |
181 |
Q |
| |
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|||||||| || ||||| || ||||| ||||| |||||||||||||||||||| |
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| T |
3178363 |
aatgaagctccttggatcctcactgtaggtgcaagcacaattgacagaaaaat |
3178415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 3240477 - 3240425
Alignment:
| Q |
129 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaat |
181 |
Q |
| |
|
|||||||| || ||||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
3240477 |
aatgaagctccttggatcctcactgtaggtgcaagcacaattgacagaaaaat |
3240425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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