View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_low_13 (Length: 307)

Name: NF19024_low_13
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_low_13
NF19024_low_13
[»] chr2 (1 HSPs)
chr2 (1-296)||(4983415-4983713)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 4983713 - 4983415
Alignment:
Q  1 aaacgtttggattgccaagtaaaagggaactattagattcattgaacattgtatttgactctt-aacaattacgtaatacaagtaggttcatagtgtttc 99  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4983713 aaacgtttggattgccaagtgaaagggaactattagattcattgaacattgtatttgactctttaacaattacgtaatacaagtaggttcatagtgtttc 4983614  T
Q  100 actaattagtatgttaacactattagaacttccctaattgcctatcaattttcctgaggatttcagtgacaatttcgtaggaaacattttccttcggata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4983613 actaattagtatgttaacactattagaacttccctaattgcctatcaattttcctgaggatttcagtgacaatttcgtaggaaacattttccttcggata 4983514  T
Q  200 ttgccaagaacgtaagcgcccaaatagagcactttcttctttccaag--nnnnnnnntcctataaatacttttttgaagctactatatgtattgttcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  4983513 ttgccaagaacgtaagcgcccaaatagagcactttcttctttccaagaaaaaaaaaatcctataaatacttttttgaagctactatatgtattgttcat 4983415  T

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