View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_low_15 (Length: 282)
Name: NF19024_low_15
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 46931306 - 46931557
Alignment:
| Q |
16 |
atcctaattcttgttagttaatcccatcaatgatgagatttgtatcattactacaaaagataagaatcaagnnnnnnnnnnnnnnnnnnnnnncatacta |
115 |
Q |
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| T |
46931306 |
atcctaattcttgttagttaatcccatcaatgatgagatttgtatcattactacaaaagataagaatcaagaaaaaagtgaaaaaataaaaaacatacta |
46931405 |
T |
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| Q |
116 |
gtaaacacaaaacttgtccctacttcaatatctccattttaagtcaaaaaagtaaaactaaccaaaaccggcatttagattcccctagtgattttcttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46931406 |
gtaaacacaaaacttgtccctacttcaatatctccattttaagtcaaaaaagtaaaactaaccaaaaccggcatttagattcccctagtgattttcttta |
46931505 |
T |
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| Q |
216 |
atttgtcattttctccaaccacatcatctctctaataatcaaaggtatataa |
267 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46931506 |
atttgtcattttctccaatcacatcatctctctaataatcaaaggtatataa |
46931557 |
T |
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