View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_low_19 (Length: 249)

Name: NF19024_low_19
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_low_19
NF19024_low_19
[»] chr8 (2 HSPs)
chr8 (64-247)||(32019705-32019889)
chr8 (77-121)||(40642366-40642410)
[»] chr2 (3 HSPs)
chr2 (62-129)||(26179552-26179619)
chr2 (62-109)||(2757820-2757867)
chr2 (9-65)||(2758483-2758539)
[»] chr3 (1 HSPs)
chr3 (62-241)||(47955909-47956095)
[»] chr7 (3 HSPs)
chr7 (62-129)||(38095440-38095507)
chr7 (62-121)||(26788987-26789046)
chr7 (19-67)||(40261512-40261560)
[»] chr1 (2 HSPs)
chr1 (9-67)||(38002940-38002998)
chr1 (9-67)||(38003607-38003665)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 247
Target Start/End: Complemental strand, 32019889 - 32019705
Alignment:
Q  64 tttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaag-cttctctgccggaaaaacggctccccctaccattca- 161  Q
    ||||||||||| ||||||| |||||||||| || |||||| ||||||||||||||||||||| | |||||| || ||||||  | |||||||| |||||     
T  32019889 tttattcaaatctacaaacgcctcccctattatataacaccgttagttctctgttaactaagccctctctgtcgaaaaaactac-ccccctacaattcat 32019791  T
Q  162 ctttgcttttcatacaacgaccaagtaatgatagctgcagtgccacaccaggctgttcaatgaacttctttatactcacacatgct 247  Q
    ||||||||||||||||| | || || |||||||||   ||||||||| || ||||||||| |||||||||| ||||||||||||||    
T  32019790 ctttgcttttcatacaatggccgagcaatgatagcaaaagtgccacagcaagctgttcaacgaacttctttgtactcacacatgct 32019705  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 40642410 - 40642366
Alignment:
Q  77 acaaacacctcccctatcatgtaacactgttagttctctgttaac 121  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||    
T  40642410 acaaacacctcccctatcatgtaacactgttggtgctctggtaac 40642366  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 26179619 - 26179552
Alignment:
Q  62 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaagcttc 129  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26179619 tttttattcaaatctacaaacaccacccctatcatgtaacactgttagttctctgttaactaagcttc 26179552  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 2757820 - 2757867
Alignment:
Q  62 tttttattcaaatatacaaacacctcccctatcatgtaacactgttag 109  Q
    |||||||| |||| ||||| |||||||||||||||||||||| |||||    
T  2757820 tttttatttaaatttacaagcacctcccctatcatgtaacaccgttag 2757867  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 2758539 - 2758483
Alignment:
Q  9 attatactcgcctcccttaaggtattcttaaatagcactgacattccctctagtttt 65  Q
    |||| |||| ||||||||||||| |||||||||| |||| |||| ||||||| ||||    
T  2758539 attacactcacctcccttaaggtcttcttaaataacactaacatcccctctaatttt 2758483  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 47956095 - 47955909
Alignment:
Q  62 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaagcttctctgccggaaaaacggctccccctaccattca 161  Q
    |||||| |||||| |||||||||| ||||| ||||||||||| ||| |||||||||||||| ||||||  || || ||||||  ||||||||||||||||    
T  47956095 tttttaatcaaatctacaaacaccacccctgtcatgtaacaccgttggttctctgttaacttagcttccttgtcgaaaaaactactccccctaccattca 47955996  T
Q  162 -ctttgc-------ttttcatacaacgaccaagtaatgatagctgcagtgccacaccaggctgttcaatgaacttctttatactcaca 241  Q
     || |||       ||| ||||||||| ||||  ||| || ||  | ||||||||||||||||||||| |||||||||||||||||||    
T  47955995 tctatgctttacaatttgcatacaacg-ccaaacaataatggccacggtgccacaccaggctgttcaacgaacttctttatactcaca 47955909  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 38095507 - 38095440
Alignment:
Q  62 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaagcttc 129  Q
    |||||||||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  38095507 tttttattcatatctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttc 38095440  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 26789046 - 26788987
Alignment:
Q  62 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaac 121  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  26789046 tttttattcaaatctacaaacaccacccctatcatgtaacactgttagttctgtgttaac 26788987  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40261560 - 40261512
Alignment:
Q  19 cctcccttaaggtattcttaaatagcactgacattccctctagttttta 67  Q
    |||||||||||||||||||| ||  |||| |||| ||||||||||||||    
T  40261560 cctcccttaaggtattcttatatgacactaacatcccctctagttttta 40261512  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 38002940 - 38002998
Alignment:
Q  9 attatactcgcctcccttaaggtattcttaaatagcactgacattccctctagttttta 67  Q
    |||| |||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||    
T  38002940 attacactcacctccctttaggttttcttaaatagcactaacatcccctctagttttta 38002998  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 38003665 - 38003607
Alignment:
Q  9 attatactcgcctcccttaaggtattcttaaatagcactgacattccctctagttttta 67  Q
    |||| |||| ||||||||||||| ||||||||||||||| |||  ||||||| ||||||    
T  38003665 attacactcacctcccttaaggtcttcttaaatagcactaacaacccctctacttttta 38003607  T

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