View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_low_2 (Length: 629)
Name: NF19024_low_2
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 3088787 - 3088167
Alignment:
| Q |
1 |
tgctaatgctgtgagaataatttctctgtcccacaccttataagcataaacaagaaaaacaaaaatgtcacatgaagaaattatatctgactcaatttcc |
100 |
Q |
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| T |
3088787 |
tgctaatgctgtgagaataatttctctgtcccacaccttataagcataaacaagaaaaacaaaaatgtcacatgaagaaattatatctgactcaatttcc |
3088688 |
T |
|
| Q |
101 |
ttcagcatgaagaatctaaaattcgcttaacaaagttgttttgtaaatccgtatgctagtaacaaattttttgcttacatgatgcagattagatttgtgc |
200 |
Q |
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| T |
3088687 |
ttcagcatgaagaatctaaaattcgcttaacgaagttgttttgtaaatctgtatgctagtaacatattttttgcttacatgatgcagattagatttgtgc |
3088588 |
T |
|
| Q |
201 |
cgataccagcgtagatcaatcgtgtttccacctttgtctgaggtgaatccaacgtgcatcggctgatacaaaatgaaagatatctatgataagaccaagg |
300 |
Q |
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| T |
3088587 |
cgataccagcgtagatcaatcgtgtttccacctttgtctgaggtgaatccaacgtgcatcggctgatatgaaatgaaagatatctatgataagacaaagg |
3088488 |
T |
|
| Q |
301 |
gagtaatatgataaaagcaattttaaaaatctttagacaaacctggtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatct |
400 |
Q |
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| T |
3088487 |
gagtaatatgataaaagaaattttaaaaatctttagacaaacctggtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatct |
3088388 |
T |
|
| Q |
401 |
gcaatatctccagttaatggta-nnnnnnnnnnnaacaaaatctccagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaata |
499 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3088387 |
gcaatatctccagttaatagtattttttttttttaacaaaatctccagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaaaa |
3088288 |
T |
|
| Q |
500 |
aatgacagacatgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacata |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088287 |
aatgacagacatgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatg |
3088188 |
T |
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| Q |
600 |
tcctcatggcagtcccctatg |
620 |
Q |
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|||||| |||||||||||||| |
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| T |
3088187 |
tcctcaaggcagtcccctatg |
3088167 |
T |
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