View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19024_low_21 (Length: 241)
Name: NF19024_low_21
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 27439156 - 27439343
Alignment:
| Q |
28 |
cctttaactctctgtaaattaataaacagaagacgatgaaagaatcacaaacctggcctttaaaaggaatggaagcaagaaccctatcaaaagcactctg |
127 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27439156 |
cctttaactctctgtaaat----aaacagaagacgatgaaagaatcacaaacctggcctttaaaaggaatggaagcaagaaccctatcaaaagcactctg |
27439251 |
T |
|
| Q |
128 |
acgatcagtagtcactaaaacaagataatccccgctgtcataaatatctcgaacctgccaacgttaaattgattaagctacttatattaata |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27439252 |
acgatcagtagtcactaaaacaagataatccccgctgtcataaatatctcgaacctgccaacgttaaattgattaagctacttatatgaata |
27439343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University