View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_low_22 (Length: 238)

Name: NF19024_low_22
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_low_22
NF19024_low_22
[»] chr2 (9 HSPs)
chr2 (50-238)||(4983889-4984077)
chr2 (50-174)||(41838110-41838233)
chr2 (97-161)||(8842417-8842481)
chr2 (79-171)||(12232344-12232438)
chr2 (53-161)||(20897359-20897467)
chr2 (79-141)||(14251132-14251194)
chr2 (79-160)||(25297319-25297399)
chr2 (54-94)||(31853709-31853749)
chr2 (124-160)||(44247752-44247788)
[»] chr8 (6 HSPs)
chr8 (74-159)||(13076377-13076462)
chr8 (53-159)||(28798938-28799044)
chr8 (97-161)||(9040917-9040980)
chr8 (79-162)||(9106767-9106851)
chr8 (79-159)||(41584166-41584245)
chr8 (97-161)||(34677003-34677068)
[»] chr6 (14 HSPs)
chr6 (73-149)||(9545030-9545106)
chr6 (107-158)||(22476128-22476179)
chr6 (77-158)||(1317622-1317703)
chr6 (50-160)||(12120124-12120233)
chr6 (56-174)||(16185265-16185384)
chr6 (79-158)||(18142381-18142460)
chr6 (100-161)||(13613772-13613832)
chr6 (78-161)||(12647919-12648003)
chr6 (72-140)||(30351490-30351558)
chr6 (96-159)||(16126492-16126555)
chr6 (96-155)||(22996956-22997015)
chr6 (96-155)||(23791386-23791445)
chr6 (50-160)||(26221227-26221336)
chr6 (62-161)||(25936126-25936226)
[»] chr3 (5 HSPs)
chr3 (79-175)||(31070669-31070765)
chr3 (121-169)||(41716751-41716799)
chr3 (104-149)||(2535874-2535919)
chr3 (77-149)||(32609423-32609496)
chr3 (62-142)||(45474255-45474335)
[»] chr4 (13 HSPs)
chr4 (64-159)||(32430537-32430632)
chr4 (71-161)||(53860829-53860919)
chr4 (50-174)||(25411583-25411708)
chr4 (114-161)||(5979758-5979805)
chr4 (100-158)||(44307841-44307899)
chr4 (79-159)||(24680790-24680870)
chr4 (97-161)||(48524027-48524091)
chr4 (53-157)||(54734351-54734455)
chr4 (79-159)||(4873105-4873184)
chr4 (97-141)||(37444992-37445036)
chr4 (50-160)||(40339467-40339578)
chr4 (114-161)||(3703600-3703649)
chr4 (73-161)||(32894919-32895009)
[»] chr5 (9 HSPs)
chr5 (50-160)||(30511800-30511909)
chr5 (50-160)||(30552140-30552249)
chr5 (54-161)||(30513836-30513943)
chr5 (54-161)||(30554176-30554283)
chr5 (97-161)||(5506921-5506985)
chr5 (50-161)||(12075902-12076013)
chr5 (79-172)||(14123047-14123140)
chr5 (105-149)||(5045163-5045207)
chr5 (97-133)||(14613619-14613655)
[»] chr7 (7 HSPs)
chr7 (74-141)||(22555325-22555392)
chr7 (79-141)||(37701307-37701369)
chr7 (55-161)||(5617877-5617982)
chr7 (97-158)||(7183992-7184053)
chr7 (70-129)||(21311751-21311810)
chr7 (97-155)||(693990-694048)
chr7 (53-159)||(41664914-41665020)
[»] scaffold0197 (1 HSPs)
scaffold0197 (70-129)||(26015-26074)
[»] chr1 (8 HSPs)
chr1 (50-161)||(9887383-9887494)
chr1 (79-161)||(11985468-11985550)
chr1 (118-159)||(8258928-8258969)
chr1 (50-159)||(42486407-42486516)
chr1 (79-130)||(43856359-43856410)
chr1 (97-159)||(30018649-30018710)
chr1 (79-161)||(31142456-31142537)
chr1 (50-151)||(34123582-34123683)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 4984077 - 4983889
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||| ||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4984077 caagtaaaatactaaaatgcctcaaacgatagttaactaccgctaacttataactagaaaatcgacggtagttaactaccgctgaatttttaagtcattt 4983978  T
Q  150 acatgtgtttctgagaactattggaaccatttaaaaccaaatattcatgatatagtattggtcatttgtttgcttagttctagaattgt 238  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4983977 acatgtgtttctcggaactattggaaccatttaaagcaaaatattcatgatatagtattggtcatttgtttgcttagttctagaattgt 4983889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 41838233 - 41838110
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||||||||||| | ||||||||| |||| |||| || | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  41838233 caagtaaaatattaaaatgcccccaacgataattaactaccactgacttataactagaaaa-cgacgttagttaactaccgctgaattttttagtcattt 41838135  T
Q  150 acatgtgtttctgagaactattgga 174  Q
    |||||||||||   |||||||||||    
T  41838134 acatgtgtttccaggaactattgga 41838110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 8842417 - 8842481
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  8842417 ttataattagaaaaccgacggtagttaactaccgctgagttttttagacatttccatgtgtttct 8842481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 12232344 - 12232438
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctg--aattttttagtcatttacatgtgtttctgagaactatt 171  Q
    ||||||| || |||| | ||||||||| ||||||||||||||||||||||| |||    ||||||| ||||||||||||||||||  ||||||||    
T  12232344 tagttaactatcgctgacttataactaaaaaatcgacggtagttaactaccactgttttttttttaatcatttacatgtgtttctaggaactatt 12232438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 20897467 - 20897359
Alignment:
Q  53 gtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttaca 152  Q
    |||||||| | |||||||| || || |||| || ||| ||| | |||||| ||||||| |||| ||| |||||||| |||| |||||||  |||||| ||    
T  20897467 gtaaaatacttaaatgtcttcagcggtagtaaactactgctgacttataattagaaaaccgacagtatttaactactgctggattttttgatcatttcca 20897368  T
Q  153 tgtgtttct 161  Q
    |||||||||    
T  20897367 tgtgtttct 20897359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 14251194 - 14251132
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaatttttt 141  Q
    ||||||| |||||||||||||||||   ||||||||||||| |||||||| | | ||||||||    
T  14251194 tagttaactaccgctaatttataacagaaaaatcgacggtaattaactactgtttaatttttt 14251132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 25297319 - 25297399
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttc 160  Q
    ||||||| ||||||| | ||||||||||||||  ||| | |||||||||||| ||  ||||||| |||||||| ||||||||    
T  25297319 tagttaactaccgctgacttataactagaaaactgacagcagttaactaccgttg-gttttttaatcatttacttgtgtttc 25297399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 31853709 - 31853749
Alignment:
Q  54 taaaatattaaaatgtctccaacgatagttaaataccgcta 94  Q
    |||||||||||||| |||||| |||||||||| ||||||||    
T  31853709 taaaatattaaaatatctccagcgatagttaactaccgcta 31853749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 44247788 - 44247752
Alignment:
Q  124 actaccgctgaattttttagtcatttacatgtgtttc 160  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  44247788 actaccgctgacttttttagtcatttacttgtgtttc 44247752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 13076377 - 13076462
Alignment:
Q  74 aacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    |||| ||||||| |||||||||||||||||||||||| || | ||||||||||||| | || |||||||||||||| |||||||||    
T  13076377 aacggtagttaactaccgctaatttataactagaaaaccggcagtagttaactaccacggagttttttagtcattttcatgtgttt 13076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 28799044 - 28798938
Alignment:
Q  53 gtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttaca 152  Q
    |||||||| ||||||| | |||  ||||||||| ||||||| | |||||||||||||| || |||||||||||||| ||||   ||||||||| ||| ||    
T  28799044 gtaaaatactaaaatgcccccagtgatagttaactaccgctgacttataactagaaaaccggcggtagttaactacagctgggctttttagtctttttca 28798945  T
Q  153 tgtgttt 159  Q
    |||||||    
T  28798944 tgtgttt 28798938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 9040917 - 9040980
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||||||||||  || | |||||||||||||||| | ||||||||||||| |||||||||||    
T  9040917 ttataactagaaaactgatgatagttaactaccgctg-agtttttagtcatttccatgtgtttct 9040980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 9106851 - 9106767
Alignment:
Q  79 tagttaaataccgctaa-tttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttctg 162  Q
    ||||||| ||||||| | ||||||||||||||  ||||   |||| ||||||||||||||||||| || ||| ||||||||||||    
T  9106851 tagttaactaccgctgactttataactagaaacccgacatcagttgactaccgctgaattttttaatctttttcatgtgtttctg 9106767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 41584166 - 41584245
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    ||||||| ||| ||| | ||||||||||||||||||  | ||||| |||||||||||||||||| |  |||||||||||||    
T  41584166 tagttaactactgctgacttataactagaaaatcgagagcagttatctaccgctgaattttttaat-ttttacatgtgttt 41584245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 34677003 - 34677068
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctga-attttttagtcatttacatgtgtttct 161  Q
    ||||||||||||||||| ||||| |||||||||||| |  ||||||  |||||| |||||||||||    
T  34677003 ttataactagaaaatcggcggtatttaactaccgcttagttttttttatcatttccatgtgtttct 34677068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 9545106 - 9545030
Alignment:
Q  73 caacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||| ||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||| |||||| |||||||    
T  9545106 caacggtagttaactaccgctgatttataactggaaaatcgacggtaattaactaccgctgagttttttggtcattt 9545030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 22476128 - 22476179
Alignment:
Q  107 aaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtt 158  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  22476128 aaaatcgacggtagttaactaccgctgaattttttggtcatttccatgtgtt 22476179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 1317622 - 1317703
Alignment:
Q  77 gatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtt 158  Q
    ||||||||| ||||||| ||||||||||| ||||  || | |||||||||||||||||||||||| ||||||| ||| ||||    
T  1317622 gatagttaactaccgctgatttataactaaaaaactgatgatagttaactaccgctgaattttttggtcatttccatttgtt 1317703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 12120233 - 12120124
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||||||||||  | ||| || ||||||| ||||||||  |||||||||||||| |||  | ||||||||||||||   ||||||||||||||    
T  12120233 caagtaaaatattaaaatacc-ccagcggtagttaactaccgctagcttataactagaaaaccgataggagttaactaccgctaggttttttagtcattt 12120135  T
Q  150 acatgtgtttc 160  Q
     | ||||||||    
T  12120134 gcttgtgtttc 12120124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 16185384 - 16185265
Alignment:
Q  56 aaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgct-gaattttttagtcatttacatg 154  Q
    ||||| ||||||||| ||| || ||||||| ||||| |   |||||||||||||||| || |||||||| ||||| | |  |||||| ||||||||||||    
T  16185384 aaatactaaaatgtccccagcggtagttaactaccgttggcttataactagaaaatcaaccgtagttaattaccgttggttttttttcgtcatttacatg 16185285  T
Q  155 tgtttctgagaactattgga 174  Q
    |||||||   ||||||||||    
T  16185284 tgtttctagaaactattgga 16185265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 18142460 - 18142381
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtt 158  Q
    ||||||| || ||||  ||||| ||||||||| | |||||||||||||||||||  ||||||| ||||||| ||||||||    
T  18142460 tagttaactagcgcttgtttatgactagaaaaccaacggtagttaactaccgcttgattttttggtcattttcatgtgtt 18142381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 13613832 - 13613772
Alignment:
Q  100 taactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||||||||||||||||||||| ||||  |||| ||||| ||||||| |||||||||||    
T  13613832 taactagaaaatcgacggtagttaattaccattgaa-tttttggtcattttcatgtgtttct 13613772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 12647919 - 12648003
Alignment:
Q  78 atagttaaataccgctaa-tttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    |||||||| ||||||| | ||||||| || ||| ||||| | |||||| ||||||||||||||||  |||||||| |||||||||    
T  12647919 atagttaactaccgctgactttataattaaaaattcgacagcagttaattaccgctgaattttttgatcatttacttgtgtttct 12648003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 30351490 - 30351558
Alignment:
Q  72 ccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttt 140  Q
    |||||| ||||||| |||  |||| |||||||||||||| ||||  ||| |||||||||||||||||||    
T  30351490 ccaacggtagttaactacttctaacttataactagaaaaccgacactagctaactaccgctgaattttt 30351558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 16126555 - 16126492
Alignment:
Q  96 tttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||| || |||  ||||||||    
T  16126555 tttatacctagaaaactgacggcagttaactaccgctgaattttttaatcttttttatgtgttt 16126492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 22997015 - 22996956
Alignment:
Q  96 tttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgt 155  Q
    ||||||||||||||| ||||||||||||||||| | || ||||||  ||||||| |||||    
T  22997015 tttataactagaaaaccgacggtagttaactacagttggatttttcggtcatttccatgt 22996956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 23791386 - 23791445
Alignment:
Q  96 tttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgt 155  Q
    ||||||||||||||| ||||||||||||||||| | || ||||||  ||||||| |||||    
T  23791386 tttataactagaaaaccgacggtagttaactacagttggatttttcggtcatttccatgt 23791445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 26221227 - 26221336
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||| |||||| || ||| | ||||||||  ||||||   |||||||||||||| |||| |  |||||||||||||   |||||||||||||     
T  26221227 caagtaaaatactaaaatatc-ccagcaatagttaacaaccgctggcttataactagaaaaccgacagctgttaactaccgctaggttttttagtcattc 26221325  T
Q  150 acatgtgtttc 160  Q
    || ||||||||    
T  26221326 acttgtgtttc 26221336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 25936226 - 25936126
Alignment:
Q  62 taaaatgtctccaacgatagttaaataccgctaa-tttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttc 160  Q
    |||||| ||||||||||||||||| || |||| | ||| ||||||||||    || | |||||||||| | ||||||||||| || ||||||||| ||||    
T  25936226 taaaatatctccaacgatagttaattaacgctgactttttaactagaaatctaacagcagttaactactgttgaattttttaatcttttacatgtatttc 25936127  T
Q  161 t 161  Q
    |    
T  25936126 t 25936126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 31070669 - 31070765
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttctgagaactattggaa 175  Q
    ||||||| ||||||  | ||||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||||| |||||  ||| ||||||||    
T  31070669 tagttaactaccgccgacttataactagaaaattgacggtaattaactaccgctgaattttttaatcattttcatgtttttctaggaaatattggaa 31070765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 41716751 - 41716799
Alignment:
Q  121 ttaactaccgctgaattttttagtcatttacatgtgtttctgagaacta 169  Q
    |||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  41716751 ttaactaccgttgaattttttagtcatttacctgtgtttctgggaacta 41716799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 2535874 - 2535919
Alignment:
Q  104 tagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||||| || ||||||||||||||||||||| |||||||    
T  2535874 tagaaaatcgacgataattaactaccgctgaatttttttgtcattt 2535919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 32609423 - 32609496
Alignment:
Q  77 gatagttaaataccgctaatttataactagaaaa-tcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    |||| |||| ||||||| | |||||||||||||| |||||  ||||||||||||| | | ||||||||||||||    
T  32609423 gataattaattaccgctgacttataactagaaaaatcgactatagttaactaccgttaagttttttagtcattt 32609496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 45474335 - 45474255
Alignment:
Q  62 taaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaatttttta 142  Q
    |||||| | |||| || ||||||| ||||| ||| | ||||||||||||  ||||| |||||||| |||||| ||||||||    
T  45474335 taaaatatttccagcggtagttaactaccgttaagtcataactagaaaactgacggcagttaactgccgctggatttttta 45474255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 32430537 - 32430632
Alignment:
Q  64 aaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    ||||||| ||| || ||||||| |||| |  | ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||    
T  32430537 aaatgtccccagcggtagttaactaccacagacttataactagaaaatcggcggtagttaactaccgctgaactttttagtctttttcatgtgttt 32430632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 53860829 - 53860919
Alignment:
Q  71 tccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||| |||||||  |||||| | ||||||||||||||||  |||| |||||||||| ||||||||||| ||||||| |||||||||||    
T  53860829 tccaacggtagttaaccaccgctgacttataactagaaaatcagcggtggttaactaccactgaattttttggtcatttccatgtgtttct 53860919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 25411708 - 25411583
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcga-cggtagttaactaccgctgaattttttagtcatt 148  Q
    ||||||||||| ||||||  ||||| || ||||||| ||||||  | |||||||||||||| | | |||||||||||||||| |   ||||||||||||     
T  25411708 caagtaaaatactaaaatacctccagcggtagttaactaccgcagacttataactagaaaaaccaacggtagttaactaccgttagtttttttagtcatg 25411609  T
Q  149 tacatgtgtttctgagaactattgga 174  Q
    |||||||||||||  |||||||||||    
T  25411608 tacatgtgtttctaggaactattgga 25411583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 5979805 - 5979758
Alignment:
Q  114 acggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  5979805 acggtagttaactaccgctgagttttttagtcatttccatgtgtttct 5979758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 44307899 - 44307841
Alignment:
Q  100 taactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtt 158  Q
    ||||||||||| || |||||||||||||||| |||||||||| ||||||| ||||||||    
T  44307899 taactagaaaaccggcggtagttaactaccgttgaattttttggtcatttccatgtgtt 44307841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 24680790 - 24680870
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    ||||||| |||||||   ||||||||||| || ||||||||||||| |||||||||||||||   |||||| |||||||||    
T  24680790 tagttaactaccgctggcttataactagagaaccgacggtagttaattaccgctgaatttttcgatcattttcatgtgttt 24680870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 48524091 - 48524027
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||||| ||||||||| |||||||||||||| ||| |||||| ||||||| ||| |||||||    
T  48524091 ttataactaaaaaatcgacagtagttaactaccgttgagttttttggtcattttcatatgtttct 48524027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 54734455 - 54734351
Alignment:
Q  53 gtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttaca 152  Q
    |||||||| | |||||||  ||||| ||||||| | ||||||  ||||||||||||||  | ||||||||||||||| ||  ||||||| ||||||| ||    
T  54734455 gtaaaatacttaaatgtccgcaacggtagttaactcccgctatcttataactagaaaactggcggtagttaactaccactcgattttttggtcatttcca 54734356  T
Q  153 tgtgt 157  Q
    |||||    
T  54734355 tgtgt 54734351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 4873105 - 4873184
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    ||||||| ||||||| | ||||||||||||||  || |||||||||||||| |||   ||||||||||||| |||||||||    
T  4873105 tagttaactaccgctgacttataactagaaaactgatggtagttaactaccactg-ggtttttagtcattttcatgtgttt 4873184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 37445036 - 37444992
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaatttttt 141  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||    
T  37445036 ttataattagaaaatcgacggtaattaattaccgctgaatttttt 37444992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 40339467 - 40339578
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatc-gacggtagttaactaccgctgaattttttagtcatt 148  Q
    ||||||||||| ||| ||  ||||| || ||||||| ||  ||| | |||||||||||||| | |||   |||||||||||||||| |||||||||||||    
T  40339467 caagtaaaatactaacatacctccagcggtagttaactattgctgacttataactagaaaacccgacaacagttaactaccgctgagttttttagtcatt 40339566  T
Q  149 tacatgtgtttc 160  Q
    ||| ||| ||||    
T  40339567 tacttgtatttc 40339578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 3703649 - 3703600
Alignment:
Q  114 acggtagttaactaccgctga--attttttagtcatttacatgtgtttct 161  Q
    |||||||||||||||||||||  ||||||| ||||||| |||||||||||    
T  3703649 acggtagttaactaccgctgatgattttttggtcattttcatgtgtttct 3703600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 32895009 - 32894919
Alignment:
Q  73 caacgatagttaaataccgctaa-tttataactagaaaatcgacggtagttaactaccgctgaatttttt-agtcatttacatgtgtttct 161  Q
    ||||| ||||||| ||||||| | |||||||||| |||| |||| |  ||||||| || ||||||||||| |||||||||| |||||||||    
T  32895009 caacggtagttaactaccgctgactttataactaaaaaaccgacagctgttaactgccactgaatttttttagtcatttacttgtgtttct 32894919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 30511909 - 30511800
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    |||||||||||||||||| |||| |||  ||||||| ||| |||   ||||||||||||||||||| | |||||||||  | ||||||||||||||||||    
T  30511909 caagtaaaatattaaaatatctctaacagtagttaactactgctggcttataactagaaaatcgacagcagttaacta-tgttgaattttttagtcattt 30511811  T
Q  150 acatgtgtttc 160  Q
    || ||||||||    
T  30511810 acttgtgtttc 30511800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 30552249 - 30552140
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    |||||||||||||||||| |||| |||  ||||||| ||| |||   ||||||||||||||||||| | |||||||||  | ||||||||||||||||||    
T  30552249 caagtaaaatattaaaatatctctaacagtagttaactactgctggcttataactagaaaatcgacagcagttaacta-tgttgaattttttagtcattt 30552151  T
Q  150 acatgtgtttc 160  Q
    || ||||||||    
T  30552150 acttgtgtttc 30552140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 30513836 - 30513943
Alignment:
Q  54 taaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacat 153  Q
    ||||||| |||||||||  || |  ||||||| ||||||| | ||||||||||||||  |||||||||||||||||||||   ||||||||| ||| |||    
T  30513836 taaaatactaaaatgtcctcagcagtagttaactaccgctgacttataactagaaaactgacggtagttaactaccgctgggctttttagtctttttcat 30513935  T
Q  154 gtgtttct 161  Q
    ||||||||    
T  30513936 gtgtttct 30513943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 30554176 - 30554283
Alignment:
Q  54 taaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacat 153  Q
    ||||||| |||||||||  || |  ||||||| ||||||| | ||||||||||||||  |||||||||||||||||||||   ||||||||| ||| |||    
T  30554176 taaaatactaaaatgtcctcagcagtagttaactaccgctgacttataactagaaaactgacggtagttaactaccgctgggctttttagtctttttcat 30554275  T
Q  154 gtgtttct 161  Q
    ||||||||    
T  30554276 gtgtttct 30554283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 5506921 - 5506985
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||| |||||| || ||||||||    
T  5506921 ttataactagaaaatcggcggtagttaattaccactgaattttttaatcattttcacgtgtttct 5506985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 12075902 - 12076013
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||| ||||||  ||||| || ||||||| ||||||| | |||||||||||||| || | | |||||||| |||||   |||||| |||||||    
T  12075902 caagtaaaatactaaaatacctccagcggtagttaactaccgctgacttataactagaaaaccggcagcagttaactgccgcttggttttttggtcattt 12076001  T
Q  150 acatgtgtttct 161  Q
    || |||||||||    
T  12076002 acttgtgtttct 12076013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 14123047 - 14123140
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttctgagaactattg 172  Q
    ||||||| |||||||   |||||||||||||| || |   ||||||||||| || | |||||||||| ||||||||||||| | | ||||||||    
T  14123047 tagttaactaccgctggcttataactagaaaaccggcaacagttaactaccactcagttttttagtcttttacatgtgtttttaaaaactattg 14123140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 5045207 - 5045163
Alignment:
Q  105 agaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||| || ||||||||||||||||| || |||||||||||||    
T  5045207 agaaaattgatggtagttaactaccgctaaaatttttagtcattt 5045163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 14613619 - 14613655
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctg 133  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  14613619 ttataactagaaaatcggcggtagttaactaacgctg 14613655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 22555325 - 22555392
Alignment:
Q  74 aacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaatttttt 141  Q
    |||||||||||| ||||| | |||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  22555325 aacgatagttaactaccgttgatttataactagaaaaccgaaggtagtttactaccgctgaatttttt 22555392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 37701307 - 37701369
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaatttttt 141  Q
    ||||||| ||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||    
T  37701307 tagttaactaccgctgacttataactaaaaaatcgacggtagttaactaccgttgaatttttt 37701369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 5617877 - 5617982
Alignment:
Q  55 aaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatg 154  Q
    |||||| ||||||| ||||| || ||||||| |||||||   |||||||||||||| || ||||| |||||||||||||   ||||||||| ||| ||||    
T  5617877 aaaatactaaaatg-ctccagcggtagttaactaccgctggcttataactagaaaaccggcggtaattaactaccgctgggctttttagtctttttcatg 5617975  T
Q  155 tgtttct 161  Q
    |||||||    
T  5617976 tgtttct 5617982  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 7183992 - 7184053
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtt 158  Q
    |||||| ||||||||||||||||||||| ||||||| | ||||||||||||||  |||||||    
T  7183992 ttataattagaaaatcgacggtagttaattaccgctaagttttttagtcatttctatgtgtt 7184053  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 21311751 - 21311810
Alignment:
Q  70 ctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactacc 129  Q
    |||||||| ||||||| |||||||   ||||||||||||||| ||||||| |||||||||    
T  21311751 ctccaacggtagttaactaccgctggcttataactagaaaattgacggtaattaactacc 21311810  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 694048 - 693990
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgt 155  Q
    |||||| |||||||||||| ||||||||||||||| || |||||| || |||| |||||    
T  694048 ttataattagaaaatcgacagtagttaactaccgccgagttttttggtaatttccatgt 693990  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 41665020 - 41664914
Alignment:
Q  53 gtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttaca 152  Q
    |||||||||||||||| ||||||| ||| || | |||||   | ||||||||| |||||||||| || ||||||||| || || |||||| || |||  |    
T  41665020 gtaaaatattaaaatgactccaacaataatttactaccgtcgacttataactataaaatcgacgataattaactaccactaaactttttaatctttttta 41664921  T
Q  153 tgtgttt 159  Q
    |||||||    
T  41664920 tgtgttt 41664914  T

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Target: scaffold0197 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 26015 - 26074
Alignment:
Q  70 ctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactacc 129  Q
    |||||||| ||||||| ||||||| | ||||||||||||||| ||||||| |||||||||    
T  26015 ctccaacggtagttaactaccgctgacttataactagaaaattgacggtaattaactacc 26074  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 9887383 - 9887494
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    |||||||||||||||||| ||| || || ||||||| |||  || | ||||||||||||||| | | | |||||||| ||  |||||||||||| |||||    
T  9887383 caagtaaaatattaaaatatcttcagcggtagttaactactactgacttataactagaaaattggcagcagttaactgccattgaattttttagccattt 9887482  T
Q  150 acatgtgtttct 161  Q
    || ||| |||||    
T  9887483 acttgtatttct 9887494  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 11985550 - 11985468
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||| || |||| | |||||||||||||  |||| ||| |||||||||| ||| |||||| ||||||| |||||||||||    
T  11985550 tagttaactatcgctgacttataactagaaatccgacagtaattaactaccgatgagttttttggtcattttcatgtgtttct 11985468  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 8258969 - 8258928
Alignment:
Q  118 tagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  8258969 tagttaactaccgctgagttttttagtcattttcatgtgttt 8258928  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 42486407 - 42486516
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||| ||||||  ||||  || ||||||| ||| |||   |||||||||||||| || | | ||||||||| ||||| |||||||| ||||||    
T  42486407 caagtaaaatactaaaatacctcctgcggtagttaactactgctggcttataactagaaaaccggcagcagttaactatcgctggattttttaatcattt 42486506  T
Q  150 acatgtgttt 159  Q
    || |||||||    
T  42486507 acttgtgttt 42486516  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 43856410 - 43856359
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccg 130  Q
    ||||||| ||||||| | |||||||||||||| ||||||||| |||||||||    
T  43856410 tagttaattaccgctgacttataactagaaaaccgacggtaggtaactaccg 43856359  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 30018649 - 30018710
Alignment:
Q  97 ttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgttt 159  Q
    ||||||||||||||||| |||||||||||||||| ||   ||||| ||||||| |||||||||    
T  30018649 ttataactagaaaatcggcggtagttaactaccgttg-ggtttttggtcatttccatgtgttt 30018710  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 31142537 - 31142456
Alignment:
Q  79 tagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcatttacatgtgtttct 161  Q
    ||||||| |||| | || |||||||| ||||| ||||| ||||||||||||||||| ||||| | | |||| |||||||||||    
T  31142537 tagttaactaccaccaacttataactggaaaaccgacgttagttaactaccgctgagtttttga-ttatttccatgtgtttct 31142456  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 34123582 - 34123683
Alignment:
Q  50 caagtaaaatattaaaatgtctccaacgatagttaaataccgctaatttataactagaaaatcgacggtagttaactaccgctgaattttttagtcattt 149  Q
    ||||||||||||||||||  | | |||| ||||||| |||| |||| |||||  ||||||| || | | |||||||| || |||| |||||| |||||||    
T  34123582 caagtaaaatattaaaatacccctaacggtagttaactaccactaacttatagttagaaaaccggcagcagttaactgccactgatttttttggtcattt 34123681  T
Q  150 ac 151  Q
    ||    
T  34123682 ac 34123683  T

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