View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_low_24 (Length: 227)
Name: NF19024_low_24
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_24 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 37843947 - 37844167
Alignment:
| Q |
7 |
tgatgtatatagctatggagttattttgcttgagataataacaagaaagaaggtggtagttccctgtttgaatgatgatacaaatgtgacctctttagtg |
106 |
Q |
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| T |
37843947 |
tgatgtatatagctatggagttattttgcttgagataataacaagaaagaaggtggtagttccctgtttgaatgatgatacaaatgtgacctctttagtg |
37844046 |
T |
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| Q |
107 |
agctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattcagctgcgctgaccaggc |
206 |
Q |
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| T |
37844047 |
agctgggctagatctgtatggctggaaacaggcaaaattgagtacattgctgattcataccttgcaagaagatttcccaattcagctgcgctgaccaggc |
37844146 |
T |
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| Q |
207 |
aagtcactacaatgtttttat |
227 |
Q |
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| T |
37844147 |
aagtcactacaatgtttttat |
37844167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 37845560 - 37845780
Alignment:
| Q |
7 |
tgatgtatatagctatggagttattttgcttgagataataacaagaaagaaggtggtagttccctgtttgaatgatgatacaaatgtgacctctttagtg |
106 |
Q |
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| T |
37845560 |
tgatgtatacagctacggagttgttttgctcgagctaataaccagaaagaaagtgtttgctccctattttgatgatgaaacaaaggagaccagtttagtg |
37845659 |
T |
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| Q |
107 |
agctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattcagctgcgctgaccaggc |
206 |
Q |
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| T |
37845660 |
tgctgggcaagatctatatggctggaaacaggcaaaatcgagaagattgtcgattcataccttgccagttcatttcccaattcagtggaactaaccaagc |
37845759 |
T |
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| Q |
207 |
aagtcactacaatgtttttat |
227 |
Q |
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| T |
37845760 |
aagtcacgtcaatgtttttat |
37845780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 37832578 - 37832761
Alignment:
| Q |
7 |
tgatgtatatagctatggagttattttgcttgagataataacaagaaagaaggtggtagttccctgtttgaatgatgatacaaatgtgacctctttagtg |
106 |
Q |
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| T |
37832578 |
tgatgtatatagctacggagttgttttgcttgagctaataaccagaaagaaattgttagttccctctttaaacgatgaagcagaggagacccccttagtg |
37832677 |
T |
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| Q |
107 |
agctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattca |
190 |
Q |
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| T |
37832678 |
atctgggctagatctgtatggctgaaaacaggcaaaactgagaagattgttgatcattaccttgcaagtgaatttcccaattca |
37832761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 37851430 - 37851480
Alignment:
| Q |
7 |
tgatgtatatagctatggagttattttgcttgagataataacaagaaagaa |
57 |
Q |
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| T |
37851430 |
tgatgtatatagctacggagttgttttgctcgagataataaccagaaagaa |
37851480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 36866782 - 36866966
Alignment:
| Q |
7 |
tgatgtatatagctatggagttattttgcttgagataataacaagaaagaaggtggtagttccctgtttgaatgatgatacaaatgtgacctctttagtg |
106 |
Q |
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|||||||||||||||||||||| ||||||| ||| ||||||| |||||||| | |||| |||| | |||||||||| | || | |||| ||||| |
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| T |
36866782 |
tgatgtatatagctatggagttgttttgctcgagctaataaccagaaagaaattattagtcccctctatgaatgatgaggcgaaggagacccacatagtg |
36866881 |
T |
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| Q |
107 |
agctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattcag |
191 |
Q |
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| T |
36866882 |
acctgggctagatctgtattgctggaaacaggcaaaatcgagaagattgccgatccctaccttgcaagtgcatttcccaattcag |
36866966 |
T |
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