View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_low_4 (Length: 515)

Name: NF19024_low_4
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_low_4
NF19024_low_4
[»] chr8 (3 HSPs)
chr8 (83-513)||(5663893-5664323)
chr8 (408-460)||(31042780-31042832)
chr8 (408-498)||(29703430-29703519)
[»] chr5 (6 HSPs)
chr5 (408-513)||(2707435-2707538)
chr5 (426-507)||(34064838-34064919)
chr5 (461-498)||(13208707-13208744)
chr5 (441-498)||(14395342-14395399)
chr5 (467-507)||(34064126-34064166)
chr5 (467-498)||(23206298-23206329)
[»] chr4 (9 HSPs)
chr4 (102-174)||(52206864-52206936)
chr4 (377-513)||(53522852-53522991)
chr4 (446-507)||(56459731-56459792)
chr4 (426-498)||(52206435-52206507)
chr4 (440-498)||(50464280-50464338)
chr4 (426-498)||(4782527-4782599)
chr4 (446-498)||(30765441-30765493)
chr4 (467-507)||(56459002-56459042)
chr4 (438-498)||(35318328-35318388)
[»] chr1 (2 HSPs)
chr1 (446-507)||(19402351-19402412)
chr1 (467-507)||(19403101-19403141)
[»] chr3 (1 HSPs)
chr3 (377-472)||(29535553-29535650)
[»] chr2 (3 HSPs)
chr2 (373-472)||(37569914-37570014)
chr2 (432-498)||(3130166-3130232)
chr2 (426-465)||(20940163-20940202)
[»] scaffold0728 (1 HSPs)
scaffold0728 (467-507)||(114-154)
[»] chr7 (1 HSPs)
chr7 (426-498)||(23365293-23365365)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 83 - 513
Target Start/End: Original strand, 5663893 - 5664323
Alignment:
Q  83 ttacctattcaaacaaaatcttcaattaaattaaattggatttaatccaatgaattgagagaagagtgcttagcaaaatcaattcaattcaattcgacac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663893 ttacctattcaaacaaaatcttcaattaaattaaattggatttaatccaatgaattgagagaagagtgcttagcaaaatcaattcaattcaattcgacac 5663992  T
Q  183 accaatagaaggaaggaacagagatgcatatgggtatcaccgtaactggtgggatgatgaagacgagggtgagaaaaaagattcaattgttagaagatat 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5663993 accaatagaaggaaggaacagagatgcatatgggtatcatcgtaactggtgggatgatgaagacgagggtgagaaaaaagattcaattgttagaagagat 5664092  T
Q  283 ttgaaaaacaccacgttaaagaaattctttaaaatacatatctgatgaaaagtgatctcgaggtaaatggctatgggtggacatccgttcttgtttgggg 382  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  5664093 ttgaaaaacaccacgttaaagaaattctttgaaatacatatctaatgaaaagtgatctcgaggtaaatggctatgggtggacatacgttcttgtttaggg 5664192  T
Q  383 aagatgaacaaatgaatgagttcaaaattaatagaatatgttaagacacatgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataa 482  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5664193 aagatgaacaaatgaatgagttgagaattaatagaatatgttaagacacatgtgagacttttaaatccgaaccatttatttttcatctaaaggttgataa 5664292  T
Q  483 gtgttctcaccattctagtataatttaccca 513  Q
    ||||||||||||||||  ||||||| |||||    
T  5664293 gtgttctcaccattctcatataattaaccca 5664323  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 31042832 - 31042780
Alignment:
Q  408 aattaatagaatatgttaagacacatgtgagacttttaaatctgaaccattta 460  Q
    |||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  31042832 aattgatagaatatgttaagacacatgtgagtctttttaatctgaaccattta 31042780  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 498
Target Start/End: Original strand, 29703430 - 29703519
Alignment:
Q  408 aattaatagaatatgttaagacacatgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    |||| |||||||| | | |||||||||||| | |||| ||| |  |||||| |||||| ||||||||||||||||||||||||||||||||    
T  29703430 aattgatagaataggatgagacacatgtga-agtttttaatttagaccattaatttttgatctaaaggttgataagtgttctcaccattct 29703519  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 408 - 513
Target Start/End: Complemental strand, 2707538 - 2707435
Alignment:
Q  408 aattaatagaatatgttaagacacatgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    |||| |||||||| ||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||    
T  2707538 aattgatagaataggttaagacacatgtgagccttttaa-tctggaccatttattttttatctaaaggttgataag-gttctcaccattctcatataatt 2707441  T
Q  508 taccca 513  Q
     |||||    
T  2707440 aaccca 2707435  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 507
Target Start/End: Original strand, 34064838 - 34064919
Alignment:
Q  426 agacacatgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    |||||||||| ||  |||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  34064838 agacacatgtaagtttttttaatctagaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataatt 34064919  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 13208744 - 13208707
Alignment:
Q  461 tttttcatctaaaggttgataagtgttctcaccattct 498  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13208744 ttttttatctaaaggttgataagtgttctcaccattct 13208707  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 14395342 - 14395399
Alignment:
Q  441 ttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    |||| ||||||  ||||| |||||| ||| ||||||||||||||||||||||||||||    
T  14395342 tttttaatctggtccattcattttttatccaaaggttgataagtgttctcaccattct 14395399  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 34064166 - 34064126
Alignment:
Q  467 atctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  34064166 atctaaaggttgataagtgttctcaccattctcatataatt 34064126  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 498
Target Start/End: Complemental strand, 23206329 - 23206298
Alignment:
Q  467 atctaaaggttgataagtgttctcaccattct 498  Q
    ||||||||||||||||||||||||||||||||    
T  23206329 atctaaaggttgataagtgttctcaccattct 23206298  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 52206864 - 52206936
Alignment:
Q  102 cttcaattaaattaaattggatttaatccaatgaattgagagaagagtgcttagcaaaatcaattcaattcaa 174  Q
    |||||||||||| | |||||||||||||||||||||||||| || |||||| | |||||||||||||||||||    
T  52206864 cttcaattaaatgagattggatttaatccaatgaattgagacaatagtgctcaacaaaatcaattcaattcaa 52206936  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 513
Target Start/End: Complemental strand, 53522991 - 53522852
Alignment:
Q  377 ttggggaagatgaacaaatgaatgagttc---aaaattaatagaatatgttaagacacatgtgagacttttaaatctgaaccatttatttttcatctaaa 473  Q
    ||||||||||||||||||| ||||||||    | |||| ||| ||||  ||||||||||||||||  || ||| |||||||||||||||| | | |||||    
T  53522991 ttggggaagatgaacaaattaatgagttgttgagaattgatacaatagattaagacacatgtgagcattctaa-tctgaaccatttatttctgacctaaa 53522893  T
Q  474 -ggttgataagtgttctcaccattctagtataatttaccca 513  Q
     |||||||||||||||||||||||||  ||||||| |||||    
T  53522892 aggttgataagtgttctcaccattctcatataattaaccca 53522852  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 446 - 507
Target Start/End: Original strand, 56459731 - 56459792
Alignment:
Q  446 aatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  56459731 aatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataatt 56459792  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 498
Target Start/End: Complemental strand, 52206507 - 52206435
Alignment:
Q  426 agacacatgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||| || |||||| |||| |||||||||||||    
T  52206507 agacacatgtgagtctttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattct 52206435  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 50464280 - 50464338
Alignment:
Q  440 cttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    ||||||||||| |||||||||||| | |||||| ||||||||| | |||||||||||||    
T  50464280 cttttaaatctcaaccatttatttgtaatctaatggttgataattattctcaccattct 50464338  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 4782527 - 4782599
Alignment:
Q  426 agacacatgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    |||||||||||| |||||| ||||||| || || | |||| || ||||  |||||||||||||||||||||||    
T  4782527 agacacatgtgaaactttttaatctgatcctttcaatttttatttaaaaattgataagtgttctcaccattct 4782599  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 30765441 - 30765493
Alignment:
Q  446 aatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    |||||| |||| || ||||| |||||||||||||||||| |||||||||||||    
T  30765441 aatctggaccacttgtttttgatctaaaggttgataagtattctcaccattct 30765493  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 56459042 - 56459002
Alignment:
Q  467 atctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  56459042 atctaaaggttgataagtgttctcaccattctcatataatt 56459002  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 35318328 - 35318388
Alignment:
Q  438 gacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    ||||||| ||||| |||||||||||||| |||||| ||||||| |   |||||||||||||    
T  35318328 gactttttaatctcaaccatttatttttaatctaatggttgatgatcattctcaccattct 35318388  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 446 - 507
Target Start/End: Complemental strand, 19402412 - 19402351
Alignment:
Q  446 aatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  19402412 aatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataatt 19402351  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 19403101 - 19403141
Alignment:
Q  467 atctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  19403101 atctaaaggttgataagtgttctcaccattctcatataatt 19403141  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 472
Target Start/End: Complemental strand, 29535650 - 29535553
Alignment:
Q  377 ttggggaagatgaacaaatgaatgagttcaa---aattaatagaatatgttaagacacatgtgagacttttaaatctgaaccatttatttttcatctaa 472  Q
    ||||||||||||| |||||||||| ||| |    |||| |||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| ||||||    
T  29535650 ttggggaagatgatcaaatgaatgtgttgatgagaattgatagaataggttaagacacatgtgagcctttt-aatctggaccatttatttttgatctaa 29535553  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 472
Target Start/End: Original strand, 37569914 - 37570014
Alignment:
Q  373 ttgtttggggaagatgaacaaatgaatgagt---tcaaaattaatagaatatgttaagacacatgtgagacttttaaatctgaaccatttatttttcatc 469  Q
    |||||||||||||||||||||||||||||||   | | |||| || ||||| ||||| || |||||||| ||||| |||||||||||||||||| | |||    
T  37569914 ttgtttggggaagatgaacaaatgaatgagttaatgagaattgatggaataagttaaaac-catgtgag-ctttttaatctgaaccatttatttgtaatc 37570011  T
Q  470 taa 472  Q
    |||    
T  37570012 taa 37570014  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 498
Target Start/End: Original strand, 3130166 - 3130232
Alignment:
Q  432 atgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    ||||||| ||||| ||||| || ||||||||||| |||||| |||||| |||| |||||||||||||    
T  3130166 atgtgagtctttttaatcttaatcatttatttttgatctaagggttgagaagtattctcaccattct 3130232  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 20940202 - 20940163
Alignment:
Q  426 agacacatgtgagacttttaaatctgaaccatttattttt 465  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  20940202 agacacatgtgagactttttaatctcaaccatttattttt 20940163  T

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Target: scaffold0728 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 114 - 154
Alignment:
Q  467 atctaaaggttgataagtgttctcaccattctagtataatt 507  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  114 atctaaaggttgataagtgttctcaccattctcatataatt 154  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 23365293 - 23365365
Alignment:
Q  426 agacacatgtgagacttttaaatctgaaccatttatttttcatctaaaggttgataagtgttctcaccattct 498  Q
    ||||||||||||  ||||| ||||||   |||| |||||| |||||||||||| ||||||||||||| |||||    
T  23365293 agacacatgtgaagctttttaatctggttcattcattttttatctaaaggttggtaagtgttctcacaattct 23365365  T

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