View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19024_low_5 (Length: 503)
Name: NF19024_low_5
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19024_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 23 - 488
Target Start/End: Complemental strand, 1112827 - 1112335
Alignment:
| Q |
23 |
aattcacacgttcgcgcagtaaacagatcggtaactgttggatcgaaatcgaaaggtgcaaaacgtaagcaaattttga----------attctaaaaca |
112 |
Q |
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| T |
1112827 |
aattcacatgttcgcgcagtaaacagattggtaactgttggatcgagatcgaaaggtgcaaaacgtaagcaaattttgatattttttgaattctaaaaca |
1112728 |
T |
|
| Q |
113 |
tcgatcttgaaatttggaccttccaatcttgatttaacgatactaatacatacgctaaccgtgtgaatgcgtggaatttgtgactgcagtaaatccaaat |
212 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1112727 |
tcgatcatgaaatttggaccttccaatcttgatttaacgatactaatacatacgctaaccgtgtgaacgcgtggaatttgtgactgcagtaaatccaaat |
1112628 |
T |
|
| Q |
213 |
ctgactattttggtagcaaa------------------aagttgtacctacaagaaacaaatgtgaaaagtttttccaaatctgactataccatacctat |
294 |
Q |
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|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1112627 |
ctgactattttggtagcaaatatcaacactcagaattaaagttgttcctactagaaacaaatgtgaaaagtttttccaaatctgactataccatacctat |
1112528 |
T |
|
| Q |
295 |
ctttttccaactttttccattatacttttttacagcagcaatcaaaagtttatcctgtaaataagaaaacaagaaaagtgagattcatgactctgtatag |
394 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1112527 |
ctttttccaactttt-ccattatacttttttacagcatcaatcaaaagtttatcctgtaaataagaaaacaagaaaagtgagattcatgactctgtatag |
1112429 |
T |
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| Q |
395 |
ataatgatgttattggcaagaaattctctttggttgaatagtttcttggtaaacaagtaactttaagaattgaatggtttgttgatccttacct |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1112428 |
ataatgatgttattggcaagaaattctctttggttgaatagtttcttggtaaacaagtaactttaagaattgaatggtttgttgatccttacct |
1112335 |
T |
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