View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_low_6 (Length: 489)

Name: NF19024_low_6
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_low_6
NF19024_low_6
[»] chr7 (9 HSPs)
chr7 (10-375)||(36657409-36657780)
chr7 (188-375)||(23417201-23417388)
chr7 (146-381)||(12633370-12633613)
chr7 (155-348)||(261701-261898)
chr7 (188-372)||(19625367-19625561)
chr7 (146-317)||(35759753-35759919)
chr7 (195-317)||(29428919-29429046)
chr7 (194-317)||(5925122-5925250)
chr7 (339-371)||(33446947-33446979)
[»] chr1 (19 HSPs)
chr1 (138-374)||(7741058-7741300)
chr1 (197-375)||(15581518-15581701)
chr1 (144-291)||(48046439-48046586)
chr1 (188-375)||(42365838-42366026)
chr1 (162-348)||(41404047-41404238)
chr1 (168-377)||(34969734-34969938)
chr1 (377-489)||(15330597-15330709)
chr1 (10-112)||(7741341-7741443)
chr1 (217-348)||(16302721-16302857)
chr1 (197-377)||(42934171-42934354)
chr1 (244-377)||(50678176-50678319)
chr1 (244-377)||(49764852-49764985)
chr1 (171-342)||(39793567-39793738)
chr1 (335-378)||(16306228-16306271)
chr1 (339-377)||(35306905-35306943)
chr1 (334-376)||(48046403-48046445)
chr1 (344-373)||(24020666-24020695)
chr1 (334-371)||(41404019-41404056)
chr1 (337-377)||(7910807-7910847)
[»] chr3 (20 HSPs)
chr3 (188-378)||(27011130-27011325)
chr3 (144-375)||(39439801-39440042)
chr3 (197-348)||(42029279-42029435)
chr3 (197-371)||(44713184-44713359)
chr3 (198-375)||(32278315-32278492)
chr3 (188-291)||(25045413-25045516)
chr3 (202-348)||(23466673-23466826)
chr3 (201-348)||(2230101-2230248)
chr3 (183-348)||(24374188-24374348)
chr3 (160-334)||(23420219-23420401)
chr3 (198-345)||(29765214-29765365)
chr3 (197-345)||(25909324-25909477)
chr3 (198-274)||(14567902-14567978)
chr3 (188-235)||(40024835-40024882)
chr3 (337-378)||(43140398-43140439)
chr3 (194-237)||(11414643-11414686)
chr3 (341-379)||(48032397-48032435)
chr3 (334-375)||(25045314-25045355)
chr3 (198-235)||(30813293-30813330)
chr3 (339-375)||(35231961-35231997)
[»] chr4 (15 HSPs)
chr4 (144-377)||(35291995-35292233)
chr4 (197-375)||(46944003-46944181)
chr4 (197-381)||(41223655-41223845)
chr4 (172-368)||(50859126-50859327)
chr4 (197-377)||(48084627-48084817)
chr4 (232-373)||(3121182-3121328)
chr4 (194-348)||(21263574-21263733)
chr4 (197-357)||(22405006-22405171)
chr4 (188-342)||(31227683-31227841)
chr4 (162-372)||(41809851-41810071)
chr4 (188-377)||(35033802-35034001)
chr4 (155-319)||(4292595-4292761)
chr4 (281-377)||(25052615-25052711)
chr4 (255-379)||(4342085-4342199)
chr4 (335-375)||(34495149-34495189)
[»] chr5 (14 HSPs)
chr5 (144-375)||(11617181-11617422)
chr5 (197-348)||(4943506-4943662)
chr5 (188-379)||(30084853-30085044)
chr5 (217-348)||(7505998-7506134)
chr5 (177-348)||(5247867-5248036)
chr5 (165-338)||(9159425-9159603)
chr5 (143-274)||(31933435-31933565)
chr5 (188-291)||(29293204-29293306)
chr5 (334-375)||(41483506-41483547)
chr5 (339-378)||(16597823-16597862)
chr5 (196-380)||(8961588-8961781)
chr5 (146-294)||(10051186-10051335)
chr5 (196-375)||(30699463-30699651)
chr5 (334-378)||(32025872-32025916)
[»] scaffold0022 (2 HSPs)
scaffold0022 (160-375)||(44076-44301)
scaffold0022 (160-375)||(77797-78022)
[»] chr2 (14 HSPs)
chr2 (144-375)||(10354207-10354443)
chr2 (197-348)||(28218997-28219153)
chr2 (188-316)||(44246347-44246475)
chr2 (237-380)||(7444711-7444864)
chr2 (162-291)||(1499181-1499310)
chr2 (188-292)||(17999933-18000036)
chr2 (188-348)||(28199199-28199364)
chr2 (280-377)||(6476766-6476868)
chr2 (293-377)||(14329002-14329091)
chr2 (334-380)||(18000077-18000123)
chr2 (196-317)||(38022919-38023044)
chr2 (339-377)||(10109206-10109244)
chr2 (334-372)||(44246301-44246339)
chr2 (196-236)||(38023102-38023142)
[»] chr8 (11 HSPs)
chr8 (133-375)||(38679688-38679939)
chr8 (237-375)||(42025384-42025527)
chr8 (197-373)||(34924735-34924922)
chr8 (197-375)||(14112331-14112521)
chr8 (241-339)||(30800170-30800273)
chr8 (250-348)||(28873761-28873864)
chr8 (334-378)||(20989651-20989695)
chr8 (334-374)||(24944938-24944978)
chr8 (277-317)||(15820090-15820130)
chr8 (334-378)||(22531440-22531484)
chr8 (334-378)||(22536125-22536169)
[»] scaffold0110 (1 HSPs)
scaffold0110 (147-377)||(38517-38742)
[»] scaffold0039 (1 HSPs)
scaffold0039 (197-377)||(56861-57051)
[»] scaffold0127 (1 HSPs)
scaffold0127 (162-371)||(30097-30316)
[»] scaffold0224 (1 HSPs)
scaffold0224 (197-377)||(12417-12600)
[»] scaffold0227 (1 HSPs)
scaffold0227 (244-348)||(232-341)
[»] scaffold0011 (1 HSPs)
scaffold0011 (334-371)||(9361-9398)
[»] chr6 (5 HSPs)
chr6 (197-274)||(10871282-10871359)
chr6 (334-377)||(29063515-29063558)
chr6 (334-377)||(29118369-29118412)
chr6 (196-375)||(3639054-3639242)
chr6 (334-378)||(33091079-33091123)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 36657409 - 36657780
Alignment:
Q  10 ataatactttatcgattgattgatattaattaaaagaagtggtattaaaaacaattaagttgtagaagataataaaggcatcaaggaatacaaaacggtg 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||| |||||||||||||||||||    
T  36657409 ataatactttatcggttgattgatattaattaaaagaagtggtattaaaaaacaataagttgtagaagatgataaaggcaccaaggaatacaaaacggtg 36657508  T
Q  110 aacgnnnnnnnnnnnnnnnnnnnggaggagcagatgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggat 209  Q
    ||                     ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||    
T  36657509 aatcaaaaaagaaaaagaaaaaaggaggagcaaatgatgaaatagaaaaggtaggggcaaaattgtgattgtattaacaatattttcgattccattggat 36657608  T
Q  210 acaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattc------attttttacata 303  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| | || |||||       ||||||||| |    
T  36657609 acaccccaaattgggtggattgaaaatctggttaaatgaatggtattggatggaatgggttccatcacacttcttttcattccatttttttttttacaaa 36657708  T
Q  304 accaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcct 375  Q
    ||||||||||||||  ||| || ||||||| |||||||||||||||||  |||||||||||||| |||||||    
T  36657709 accaaacaatggaacatggttccatcccaccccattccattccatcactctccatcaatccaaatatagcct 36657780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 188 - 375
Target Start/End: Original strand, 23417201 - 23417388
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccat--- 284  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||| ||||   ||||| ||||||||||||||||| ||||||||| |||||||       
T  23417201 aatgtgttccattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcatactccatgcc 23417300  T
Q  285 --tccattcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcct 375  Q
      ||||||| ||||||||| |||||||||||||||  ||| || |||||||||||     |||||||||  ||||||||||||||||||||||    
T  23417301 attccattccttttttacaaaaccaaacaatggaacatggttccatcccactcca-----ttccatcactctccatcaatccaaacatagcct 23417388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 146 - 381
Target Start/End: Complemental strand, 12633613 - 12633370
Alignment:
Q  146 atgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaa 245  Q
    |||||||||||||  ||||| |||| |||| |||||||||  ||||| |||||||||||||||||||||| || ||||| |||||| ||| |||| ||||    
T  12633613 atgaaatagaaaaaatagggtcaaaattgtaattgtattattaatgtatttcattccattggatacaccctaatttgggaggaatggaaaattggctaaa 12633514  T
Q  246 tgaatggtattg---gatggaatgagttccatcacactccattccattc---------attt-tttacataaccaaacaatggaatgtggatctatccca 332  Q
    ||| ||||||||   |||||||||||||||||||||||||| |||||||         |||| |||||| ||||||||||||||||||||  ||||||||    
T  12633513 tgagtggtattggtcgatggaatgagttccatcacactccactccattccattccattatttgtttacaaaaccaaacaatggaatgtggccctatccca 12633414  T
Q  333 ctccattccattccatcacattccatcaatccaaacatagccttagtta 381  Q
    |      ||||||||||||  |||| ||||||||||||||||| |||||    
T  12633413 c-----accattccatcactctccaccaatccaaacatagcctaagtta 12633370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 155 - 348
Target Start/End: Original strand, 261701 - 261898
Alignment:
Q  155 aaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggta 254  Q
    ||||| ||||| |||| |||| ||||| |||  ||||| || |||| ||||||||||||||||||||| | |||||| ||| |||  ||||||| | |||    
T  261701 aaaagatagggacaaaattgtaattgtgttattaatgtgttccatttcattggatacaccccaaattgaggggaatggaaaattgagtaaatgagttgta 261800  T
Q  255 ttggatggaatgagttccatcacactccattccattca----ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
    || |||||||||  ||||||||||  |||||||||||     ||||||||| || ||||||||||||| | | |||||||||||||||| ||||||||    
T  261801 tttgatggaatggattccatcacatcccattccattccatctttttttacaaaatcaaacaatggaatatagctctatcccactccatttcattccat 261898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 372
Target Start/End: Complemental strand, 19625561 - 19625367
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || ||| |||||||||||||| ||| ||||| |||||| ||| |||| | ||||| |||||||||||||||| |||||||||||| ||||||||    
T  19625561 aatgtgttccatcccattggatacaccacaatttgggaggaatggaaaattggatgaatgagtggtattggatggaattagttccatcacattccattcc 19625462  T
Q  288 att-cat----tttttacataaccaaacaatggaatgtggatct-----atcccactccattccattccatcacattccatcaatccaaacatag 372  Q
    ||| |||    ||||| || |||||||||||| ||| ||  |||     |||||| |||||||||||||| |||  |||||||||||||||||||    
T  19625461 attccattacatttttgcaaaaccaaacaatgaaatctgactctattccatcccattccattccattccaccactctccatcaatccaaacatag 19625367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 317
Target Start/End: Complemental strand, 35759919 - 35759753
Alignment:
Q  146 atgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaa 245  Q
    ||||||||||||| || |||  ||| |||| |||| ||||  ||||| || |||||||||| ||||||||||  ||||| || || |||| |||  | ||    
T  35759919 atgaaatagaaaaagttgggataaaattgtaattgaattattaatgtgttccattccattgcatacaccccagtttgggagggattaaaaattgaatgaa 35759820  T
Q  246 tgaatggtattggatggaatgagttccatcacactccattccattcattttttacataaccaaacaatggaa 317  Q
    ||| ||||||||||||||||||| |||||     || |||||||  ||||||| || |||||||||||||||    
T  35759819 tgagtggtattggatggaatgaggtccat-----tctattccatcaattttttgcaaaaccaaacaatggaa 35759753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 317
Target Start/End: Complemental strand, 29429046 - 29428919
Alignment:
Q  195 ttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatca-----cactccattccat 289  Q
    |||||||||||| ||||||||||||||||  ||||||| || ||||   |  || || ||| ||||||||||  ||||||||     || ||||||||||    
T  29429046 ttcattccattgcatacaccccaaattggagggaatgataaattggaagagagagtgctatgggatggaatggattccatcatgtttcattccattccat 29428947  T
Q  290 tcattttttacataaccaaacaatggaa 317  Q
    |||||||||||| | |||||||||||||    
T  29428946 tcattttttacaaatccaaacaatggaa 29428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 317
Target Start/End: Original strand, 5925122 - 5925250
Alignment:
Q  194 tttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattc-- 291  Q
    ||||||||||||| ||||| ||||| ||||| ||||||||||    | | |||||||| ||||||||||||||  |||||||| | || ||||||| |      
T  5925122 tttcattccattgcatacatcccaatttgggaggaatgaaaaagctggtgaatgaatgatattggatggaatggattccatcatattctattccatacca 5925221  T
Q  292 ---attttttacataaccaaacaatggaa 317  Q
       | |||||||| |||||||||||||||    
T  5925222 tatactttttacaaaaccaaacaatggaa 5925250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 371
Target Start/End: Complemental strand, 33446979 - 33446947
Alignment:
Q  339 tccattccatcacattccatcaatccaaacata 371  Q
    ||||||||||||||| |||||||||||||||||    
T  33446979 tccattccatcacataccatcaatccaaacata 33446947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 138 - 374
Target Start/End: Complemental strand, 7741300 - 7741058
Alignment:
Q  138 agcagatgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatt 237  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||  |||||||| || ||||||||||    
T  7741300 agcagatgatgaaatataaaaggtaggggcaaagttgtgattgtattatcaatgttttccatttcattggattcacttcaaattggatgaaatgaaaatt 7741201  T
Q  238 tggttaaatgaat-ggtattggatggaatgagttccatcacac-----tccattccattcattttttacataaccaaacaatggaatgtggatctatccc 331  Q
    |||||||||| || ||||||||| |||||| ||||||||||||     ||||||||||| |||||||||| ||| |||||||||||  ||| |  |||||    
T  7741200 tggttaaatggatgggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaactaaacaatggaacatggttacatccc 7741101  T
Q  332 actccattccattccatcacattccatcaatccaaacatagcc 374  Q
    |||| ||||||||||| |||  |||||||||||||||||||||    
T  7741100 actctattccattccaccactctccatcaatccaaacatagcc 7741058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 197 - 375
Target Start/End: Complemental strand, 15581701 - 15581518
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattca---- 292  Q
    |||||||||||||||||||||||||||| |||||| ||| ||||   |||| |||||||||||||||||| ||||||||||||||||||||||||         
T  15581701 cattccattggatacaccccaaattggggggaatggaaaattgggagaatggatggtattggatggaatgggttccatcacactccattccattccattt 15581602  T
Q  293 -ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcct 375  Q
     ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  15581601 cttttttacaaaaccaaacaatggaatgtggatatatcccactccattccattccatcactctccatcaatccaaacatagcct 15581518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 144 - 291
Target Start/End: Complemental strand, 48046586 - 48046439
Alignment:
Q  144 tgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggtta 243  Q
    |||||||||| |||||| ||||||| |||||| |||||||||   |||| || ||||||||||||||||||||||||| || ||||||||||||||| |     
T  48046586 tgatgaaataaaaaaggcaggggcatagttgtcattgtattatttatgtattccattccattggatacaccccaaattagggggaatgaaaatttggctt 48046487  T
Q  244 aatgaatggtattggatggaatgagttccatcacactccattccattc 291  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  48046486 aatgggtggtattggatggaatgagttccatcacactccattccattc 48046439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 188 - 375
Target Start/End: Complemental strand, 42366026 - 42365838
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || ||||||||||||||||||||||||| | ||||||||||| ||||   ||||||||||||||||||||||| ||||||||||||||||||||    
T  42366026 aatgtgttccattccattggatacaccccaaattagatggaatgaaaaattggaagaatgaatggtattggatggaatgggttccatcacactccattcc 42365927  T
Q  288 -----attcattttttacataacc-aaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcct 375  Q
         |||||||||||| | |||| |||||||||||  |||     | ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  42365926 attccattcattttttataaaaccaaaacaatggaacatgg-----ttccattccattccattccatcactctccatcaatccaaacatagcct 42365838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 162 - 348
Target Start/End: Complemental strand, 41404238 - 41404047
Alignment:
Q  162 aggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatg 261  Q
    ||||||||| |||| ||||| |||  ||||| || |||| ||||||||||||||||||||||| |||||| ||| |||| | ||||| ||||||  ||||    
T  41404238 aggggcaaaattgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatg 41404139  T
Q  262 gaatgagttccatcacactccattccattc-----attttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
    ||||| ||||||||||| ||||||||||||      ||||||||| |||||||||||||||  ||| || ||||||||||||||||||||||    
T  41404138 gaatgggttccatcacattccattccattccattatttttttacaaaaccaaacaatggaacatggctccatcccactccattccattccat 41404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 377
Target Start/End: Complemental strand, 34969938 - 34969734
Alignment:
Q  168 aaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatga 267  Q
    ||||||||  ||||||||  ||||| ||  |||||||| |||||||||||||||||  ||||||||||||||  | ||||| |||||||||||||||||     
T  34969938 aaagttgtctttgtattattaatgtattctattccatttgatacaccccaaattgga-ggaatgaaaatttgacttaatgagtggtattggatggaatgg 34969840  T
Q  268 gttccatcacactccattccattcattttttacataaccaaacaatgg-aatgtggatctatcccactccattccattccatcacattccatcaatccaa 366  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||| ||  ||| |  |||||||     |||||||||||||  |||||||||||||    
T  34969839 gttccatcacacttcattccattcattttttacaaaatcaaacaatggaaacatggtttcatcccac-----tccattccatcactctccatcaatccaa 34969745  T
Q  367 acatagcctta 377  Q
    |||||| ||||    
T  34969744 acatagtctta 34969734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 377 - 489
Target Start/End: Complemental strand, 15330709 - 15330597
Alignment:
Q  377 agttatagtagttcattgattgaaccctacctagctttcaatctcattctcacatgnnnnnnnntgtcttccccgcgttcgattccaacggttgacggaa 476  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||||||| |||||| |||    
T  15330709 agttataggagttcatttattgaaccctacctagctttgaatctcattctcacatgaaaaaaaatgtcttccccgcgttcgattccaactgttgacagaa 15330610  T
Q  477 tcagcgctttacc 489  Q
    |||||||||||||    
T  15330609 tcagcgctttacc 15330597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 7741443 - 7741341
Alignment:
Q  10 ataatactttatcgattgattg-atattaattaaaagaagtggtattaaaaacaattaagttgtagaagataataaaggcatcaaggaatacaaaacggt 108  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||| |||||||||||||| |||    
T  7741443 ataatactttatcgattgattggatattaattaaaagaagtgatattaaaaacagt-aagttgtagaagatgataaaggcaccaaggaatacaaaatggt 7741345  T
Q  109 gaac 112  Q
    ||||    
T  7741344 gaac 7741341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 16302721 - 16302857
Alignment:
Q  217 aaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactcca-----ttccattcattttttacataaccaaaca 311  Q
    |||||||| ||||||||||  | | |||||| |||  ||||||||||||||||||||||||||||||     |||||||| ||||||||| |||||||||    
T  16302721 aaattggggggaatgaaaaaattgataaatggatgacattggatggaatgagttccatcacactccattccattccattccttttttacaaaaccaaaca 16302820  T
Q  312 atggaatgtggatctatcccactccattccattccat 348  Q
    ||||||| ||| | |||||||||||||||||||||||    
T  16302821 atggaatatggttttatcccactccattccattccat 16302857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 197 - 377
Target Start/End: Complemental strand, 42934354 - 42934171
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattc----- 291  Q
    ||||| |||||||||||| |||||||| ||||||| ||| |||    ||||| ||||||||||||||||| ||||||||||||||||||||||||         
T  42934354 cattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttccatcacactccattccattccatta 42934255  T
Q  292 ---attttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcctta 377  Q
        ||||||||| ||||||||||||||||||||     |||||  ||| |||||||||||||  |||| |||||||||||||||||||    
T  42934254 ttttttttttacaaaaccaaacaatggaatgtgg-----tcccatcccactccattccatcactctccaccaatccaaacatagcctta 42934171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 244 - 377
Target Start/End: Original strand, 50678176 - 50678319
Alignment:
Q  244 aatgaatggtattggatggaatgagttccatcacactcca-----ttccattcattttttacataaccaaacaatggaatgtggatctatcccactc--- 335  Q
    ||||| ||||||||||| ||||| ||||||||||||||||     |||||||| ||||||||| |||||||||||||||  ||| || |||||||||       
T  50678176 aatgagtggtattggatagaatgggttccatcacactccattccattccattccttttttacaaaaccaaacaatggaacatggttccatcccactcaat 50678275  T
Q  336 --cattccattccatcacattccatcaatccaaacatagcctta 377  Q
      ||||||||||||||||  ||||||||||||||||||| ||||    
T  50678276 ttcattccattccatcactctccatcaatccaaacatagtctta 50678319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 49764985 - 49764852
Alignment:
Q  244 aatgaatggtattggatggaatgagttccatcacactccattcc-----attcattttttacataaccaaacaatggaatgtggatctatcccactccat 338  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||     ||||||||||| || || ||||||||||||  ||| | ||||||||||||     
T  49764985 aatgagtggtattggatgaaatgagttccatcatactccattccatcctattcattttttgcaaaatcaaacaatggaacatggttttatcccactccac 49764886  T
Q  339 tccattccatcacattccatcaatccaaacatagcctta 377  Q
    |||||||     |||||||||||||||||||||||||||    
T  49764885 tccattc-----cattccatcaatccaaacatagcctta 49764852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 342
Target Start/End: Complemental strand, 39793738 - 39793567
Alignment:
Q  171 gttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagtt 270  Q
    ||||| |||||||||  ||||| || |||| |||||||||||||| ||||| |  |||||||||| |||  ||||||| |  ||||||||||||||| ||    
T  39793738 gttgtaattgtattattaatgtgttccatttcattggatacaccctaaattagaaggaatgaaaaattgactaaatgagttttattggatggaatgactt 39793639  T
Q  271 ccatcacactccattccattcattttttacataaccaaacaatggaatgtggatctatcccactccattcca 342  Q
    |||| ||||| ||||||| || | ||||||| | | ||| |||||||| |||   ||||||| |||||||||    
T  39793638 ccattacacttcattccaatcctcttttacaaatctaaataatggaatatggtcttatcccattccattcca 39793567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 16306228 - 16306271
Alignment:
Q  335 ccattccattccatcacattccatcaatccaaacatagccttag 378  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||    
T  16306228 ccattccattccaccacatgccatcaatccaaacaaagccttag 16306271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 35306905 - 35306943
Alignment:
Q  339 tccattccatcacattccatcaatccaaacatagcctta 377  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  35306905 tccattccattacaatccatcaatccaaacatagcctta 35306943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 48046445 - 48046403
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagcctt 376  Q
    |||||||||||||| |||  |||||||||||||||||||||||    
T  48046445 tccattccattccaccactctccatcaatccaaacatagcctt 48046403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 24020666 - 24020695
Alignment:
Q  344 tccatcacattccatcaatccaaacatagc 373  Q
    ||||||||||||||||||||||||||||||    
T  24020666 tccatcacattccatcaatccaaacatagc 24020695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 41404056 - 41404019
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacata 371  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  41404056 tccattccattccatcacataccaccaatccaaacata 41404019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 7910847 - 7910807
Alignment:
Q  337 attccattccatcacattccatcaatccaaacatagcctta 377  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  7910847 attccattccacctcattccatcaatccaaacaaagcctta 7910807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 188 - 378
Target Start/End: Complemental strand, 27011325 - 27011130
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||   ||||| ||||||||||||||||| ||||||||||||||||||||    
T  27011325 aatgtgtttcattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattcc 27011226  T
Q  288 attca-----ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagccttag 378  Q
    ||||      ||||||||| |||||||||||||||  ||| || |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  27011225 attccattccttttttacaaaaccaaacaatggaacatggttccatcccactccattccattccatcactctccatcaatccaaacatagccttag 27011130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 144 - 375
Target Start/End: Original strand, 39439801 - 39440042
Alignment:
Q  144 tgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggtta 243  Q
    ||||||||| ||||||| ||||||| |||||| ||| |||||   |||| || |||||||||||||||||||||||||||| |||||||||||||||||     
T  39439801 tgatgaaatggaaaaggcaggggcatagttgtcattatattatttatgtattccattccattggatacaccccaaattggggggaatgaaaatttggttt 39439900  T
Q  244 aatgaatggtattggatggaatgagttccatcacactccattccattca-----ttttttacataaccaaacaatggaatgtggatctatcccactcca- 337  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||      |||||| || |||||||||||||||| ||| | ||||||||||||     
T  39439901 aatgggtggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatggttttatcccactccat 39440000  T
Q  338 ----ttccattccatcacattccatcaatccaaacatagcct 375  Q
        |||||||||| |||  ||||||||||||||||||||||    
T  39440001 tccattccattccaccactctccatcaatccaaacatagcct 39440042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 42029279 - 42029435
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccatt-----c 291  Q
    ||||||||||||||||||||||||||||||||||||||| |||    ||||| ||||||||||||||||| ||||||||| |||||||||||||     |    
T  42029279 cattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccatcatactccattccattccatcc 42029378  T
Q  292 attttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
     ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||    
T  42029379 cttttttacaaaaccaaacaatggaatgtggctccatcccactccattccattccat 42029435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 197 - 371
Target Start/End: Complemental strand, 44713359 - 44713184
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattgga-------tggaatgagttccatcacactccattccat 289  Q
    ||||||||| ||||||||||||||| || |||||||||| |||||||||||| ||||||||||       |||||||||||||||||||     ||||||    
T  44713359 cattccattagatacaccccaaatttgg-ggaatgaaaaattggttaaatgagtggtattggaatttggatggaatgagttccatcaca-----ttccat 44713266  T
Q  290 tcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacata 371  Q
    | |||||||||| ||| |||||||||||||||| || ||||| ||||||||||||||| |||  ||||||||||||||||||    
T  44713265 taattttttacaaaactaaacaatggaatgtggctccatccctctccattccattccaccactctccatcaatccaaacata 44713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 375
Target Start/End: Complemental strand, 32278492 - 32278315
Alignment:
Q  198 attccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattcattttt 297  Q
    ||||||||||||||||||||| ||||| |||||| ||| |||| | ||||| ||||||||||||||||||||||||||||| |||||| ||      |||    
T  32278492 attccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttccatcacattccattaca-----attt 32278398  T
Q  298 tacataaccaaacaatggaatgtggatct-----atcccactccattccattccatcacattccatcaatccaaacatagcct 375  Q
    | || |||||||||||||||| |   |||     |||||| |||||||||||||| |||  ||||||||||||||||||||||    
T  32278397 tgcaaaaccaaacaatggaatctaactctattccatcccattccattccattccaccactctccatcaatccaaacatagcct 32278315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 291
Target Start/End: Complemental strand, 25045516 - 25045413
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || ||||||||||||||||| |||| ||||| |||||| ||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||||    
T  25045516 aatgtgttccattccattggatacacaccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttccatcacattccattcc 25045417  T
Q  288 attc 291  Q
    ||||    
T  25045416 attc 25045413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 202 - 348
Target Start/End: Complemental strand, 23466826 - 23466673
Alignment:
Q  202 cattggatacaccccaaattgggtggaa-tgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccatt------catt 294  Q
    ||||| ||||||||||||||||| |||| || ||| ||||||||||   |||||||||||| |||||||||||| ||||| |||||||||      | ||    
T  23466826 cattgcatacaccccaaattgggaggaactggaaaattggttaaataggtggtattggatgcaatgagttccattacactacattccattctattccttt 23466727  T
Q  295 ttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
    ||||||| ||||||||||| ||||||| |||||||||||| ||||| |||||||    
T  23466726 ttttacaaaaccaaacaatagaatgtgaatctatcccacttcattcaattccat 23466673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 2230101 - 2230248
Alignment:
Q  201 ccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattcattttttac 300  Q
    ||||||||||||| |||||||| |  ||||||||| |||  | |||| ||||||||||||| |||| ||||||||||| |||||| ||||||||||||||    
T  2230101 ccattggatacactccaaattgaggagaatgaaaaattgagtgaatggatggtattggatgcaatgggttccatcacattccatttcattcattttttac 2230200  T
Q  301 ataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
    | ||||||| || |||||   | | |||| ||||||||| ||||||||    
T  2230201 aaaaccaaataaaggaatcaagttatatctcactccatttcattccat 2230248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 183 - 348
Target Start/End: Original strand, 24374188 - 24374348
Alignment:
Q  183 ttaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactcc 282  Q
    |||||||||| || ||||||  | ||||||||| ||||||| ||||||||||| |||| ||| ||  |||||||||||||||||  | ||||| ||||||    
T  24374188 ttaacaatgtgttccattccgctcgatacaccctaaattggatggaatgaaaaattggctaagtgggtggtattggatggaatggataccatcccactcc 24374287  T
Q  283 attccattcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
    |||||     ||||||||| |||||||||||||||    ||||||||||| | |||||||||||||    
T  24374288 attcc-----ttttttacaaaaccaaacaatggaactatgatctatcccatttcattccattccat 24374348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 334
Target Start/End: Complemental strand, 23420401 - 23420219
Alignment:
Q  160 gtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaat-gaaaatttggttaaatgaatggtattgg 258  Q
    |||||| |||| |||| ||||| |||  ||||| ||||||| ||||| |||||||||| | |||| ||||| | ||| ||||||||||   |||||||||    
T  23420401 gtagggacaaaattgtaattgtgttattaatgtgtttcatttcattgcatacaccccacaatgggaggaattggaaaattggttaaataggtggtattgg 23420302  T
Q  259 atggaatgagttccatcacactccattccattc-------attttttacataaccaaacaatggaatgtggatctatcccact 334  Q
    ||| |||||||||||| |||||||| |||||||        ||||||||| ||||||||||| ||||||| ||||||||||||    
T  23420301 atgtaatgagttccattacactccactccattctattccttttttttacaaaaccaaacaatagaatgtgaatctatcccact 23420219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 345
Target Start/End: Original strand, 29765214 - 29765365
Alignment:
Q  198 attccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattc----at 293  Q
    ||||||||| |||||||||||||| || | |||||||||||||  |||    ||||||||||||||||   ||||||||  |||||||||||||    ||    
T  29765214 attccattgcatacaccccaaatttggggtaatgaaaatttggagaaaatggtggtattggatggaattgattccatcatgctccattccattccattat 29765313  T
Q  294 tttttacataaccaaacaatggaatgtggatctatcccactccattccattc 345  Q
     ||||||| | |||||||||||||| | | |  |||||||||||||||||||    
T  29765314 gttttacaaagccaaacaatggaatctaggttcatcccactccattccattc 29765365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 25909477 - 25909324
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatca-----cactccattccattc 291  Q
    |||| ||||| |||||||||||||||||  ||||||||| ||||   | ||  ||||||||||||||||||||||||| |     || | ||||||||||    
T  25909477 catttcattgcatacaccccaaattggggagaatgaaaaattggaatagtgggtggtattggatggaatgagttccattatatttcatttcattccattc 25909378  T
Q  292 attttttacataaccaaacaatggaatgtggatctatcccactccattccattc 345  Q
    | || ||||| |||||||||||||||||  | | || ||||||| |||||||||    
T  25909377 acttattacaaaaccaaacaatggaatgatgttataacccactctattccattc 25909324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 14567978 - 14567902
Alignment:
Q  198 attccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccat 274  Q
    ||||||||||||||||||||||||||| |||||||||| |||      || ||||||||||||||||||||||||||    
T  14567978 attccattggatacaccccaaattggggggaatgaaaaattgaaggtttggatggtattggatggaatgagttccat 14567902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 40024835 - 40024882
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaa 235  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||    
T  40024835 aatgtgttccattccattggatacaccccaaattgggaggaatgaaaa 40024882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 43140439 - 43140398
Alignment:
Q  337 attccattccatcacattccatcaatccaaacatagccttag 378  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  43140439 attccactccatcacattccatcaatccaaagatagccttag 43140398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 11414686 - 11414643
Alignment:
Q  194 tttcattccattggatacaccccaaattgggtggaatgaaaatt 237  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||    
T  11414686 tttcattctattgcatacaccccaaattggggggaatgaaaatt 11414643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 48032397 - 48032435
Alignment:
Q  341 cattccatcacattccatcaatccaaacatagccttagt 379  Q
    |||||||||||||||||||||| || |||||||||||||    
T  48032397 cattccatcacattccatcaattcagacatagccttagt 48032435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 25045355 - 25045314
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagcct 375  Q
    |||||||||||||| |||  ||||||||||||||||||||||    
T  25045355 tccattccattccaccactctccatcaatccaaacatagcct 25045314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 30813293 - 30813330
Alignment:
Q  198 attccattggatacaccccaaattgggtggaatgaaaa 235  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  30813293 attccattggatacaccccaatttggggggaatgaaaa 30813330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 35231961 - 35231997
Alignment:
Q  339 tccattccatcacattccatcaatccaaacatagcct 375  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  35231961 tccattccattacaatccatcaatccaaacatagcct 35231997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 144 - 377
Target Start/End: Complemental strand, 35292233 - 35291995
Alignment:
Q  144 tgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggtta 243  Q
    ||||||||||||||||| ||||||| |||||| |||||||||   |||| || |||||||||||||||||||||||||||  | ||||||||||||| |     
T  35292233 tgatgaaatagaaaaggcaggggcatagttgtcattgtattatttatgtattccattccattggatacaccccaaattggaggaaatgaaaatttggctt 35292134  T
Q  244 aatgaatggtattggatggaatgagttccatcacactccattccattca-----ttttttacataaccaaacaatggaatgtggatctatcccactccat 338  Q
    ||||  ||||||||||| ||||||||| ||||||||||||||||||||      |||||| || |||||||||||||||| ||| | |||||||||||||    
T  35292133 aatgggtggtattggattgaatgagttacatcacactccattccattccattccttttttgcaaaaccaaacaatggaatatggttttatcccactccat 35292034  T
Q  339 tccattccatcacattccatcaatccaaacatagcctta 377  Q
    ||||||||| |||  |||||||||||||||||| |||||    
T  35292033 tccattccaccactctccatcaatccaaacataacctta 35291995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 197 - 375
Target Start/End: Complemental strand, 46944181 - 46944003
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc-----attc 291  Q
    ||||||||||||||||||||||||||||||||||| ||| |||   |||||| ||||||||||||||||||||||||||||||||||||||     ||||    
T  46944181 cattccattggatacaccccaaattgggtggaatggaaaattgacaaaatgagtggtattggatggaatgagttccatcacactccattccattccattc 46944082  T
Q  292 attttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcct 375  Q
    ||||||||||||||||||||||||||||| ||||||||     |||||||||||||||||| |||| |||||||||||||||||    
T  46944081 attttttacataaccaaacaatggaatgttgatctatc-----ccattccattccatcacactccaccaatccaaacatagcct 46944003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 197 - 381
Target Start/End: Original strand, 41223655 - 41223845
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtatt-ggatggaatgagttccatcacactcca-----ttccatt 290  Q
    |||||||||||||||  ||||| ||||| ||||||||||  ||  ||||||| ||||||| |||||||||| ||||||||||||||||     |||||||    
T  41223655 cattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggttccatcacactccattccattccatt 41223754  T
Q  291 cattttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagccttagtta 381  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  41223755 cattttttacataaccaaacaatgggatgtggatatatcccactccattccattccatcactctccatcaatccaaacatagccttagtta 41223845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 172 - 368
Target Start/End: Complemental strand, 50859327 - 50859126
Alignment:
Q  172 ttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttc 271  Q
    |||| |||||||||  ||||| || |||||||||||||||||||||||||||| ||||||| ||||||| ||||||  |||||||||||||||||| |||    
T  50859327 ttgtaattgtattattaatgtgttccattccattggatacaccccaaattgggaggaatgacaatttggctaaatgggtggtattggatggaatgaattc 50859228  T
Q  272 catcacactccattccat-----tcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaa 366  Q
    ||||||||||||||||||     || ||||||||| |||||||||||||||  ||  || ||||||||||||||||||||| |||  | |||||||| ||    
T  50859227 catcacactccattccatcccactctttttttacaaaaccaaacaatggaacatgcttccatcccactccattccattccaccactcttcatcaatcaaa 50859128  T
Q  367 ac 368  Q
    ||    
T  50859127 ac 50859126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 197 - 377
Target Start/End: Complemental strand, 48084817 - 48084627
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattc----- 291  Q
    |||||||| | ||||  ||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||| | ||||||||||||||         
T  48084817 cattccatcgtatacctcccaaattggggggaatgaaaaattggttaaatgagtggtattggatgaaatgagttccataagactccattccattcaattc 48084718  T
Q  292 -----attttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcctta 377  Q
         |||||||||| |||||||||||||||||||| |  ||||||||||||||||||||| |||  |||||||||||||||||| |||||    
T  48084717 tattaattttttacaaaaccaaacaatggaatgtggtttcatcccactccattccattccaccactctccatcaatccaaacataccctta 48084627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 3121328 - 3121182
Alignment:
Q  232 aaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattca-----ttttttacataaccaaacaatggaatgtggatct 326  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||      |||||| || |||||||||||||||| ||| | |    
T  3121328 aaaatttggtttaatggatggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatggtttt 3121229  T
Q  327 atcccactccattccattccatcacattccatcaatccaaacatagc 373  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||||    
T  3121228 atcccactccattccattccaccactctccatcaatccaaacatagc 3121182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 21263574 - 21263733
Alignment:
Q  194 tttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattca- 292  Q
    |||||||||||| ||||||||||||||||| ||||||| ||| |||    ||||| ||||||||||||||||| ||||||||||||||||| ||||||      
T  21263574 tttcattccattcgatacaccccaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttccatcacactccatcccattcca 21263673  T
Q  293 ----ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
        ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||    
T  21263674 tcccttttttacaaaaccaaacaatggaatgtggctccatcccactccattccattccat 21263733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 22405171 - 22405006
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattca---- 292  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||    ||||| ||||||||||||||||||||||||||||||||||||||||||         
T  22405171 cattccattggatacactccaaattgggtggaatggaaaattgaaggaatgattggtattggatggaatgagttccatcacactccattccattccatcc 22405072  T
Q  293 -ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattcca 357  Q
     ||||||||| |||||||||||||||||||| || |||||||| ||||| ||| |||  |||||||    
T  22405071 tttttttacaaaaccaaacaatggaatgtggctccatcccactgcattctatttcattccattcca 22405006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 31227841 - 31227683
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacac-----tcc 282  Q
    ||||| || ||||||||||||||||| |||| ||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||||||     |||    
T  31227841 aatgtattccattccattggatacactccaatttggg-ggaatgaaaaattggttaaatgagtggtattggatggaatgatttccatcacacttcattcc 31227743  T
Q  283 attccattcattttttacataaccaaacaatggaatgtggatctatcccactccattcca 342  Q
    ||||||||||||||||||| ||||||||| || ||| ||  |||||||| ||||||||||    
T  31227742 attccattcattttttacaaaaccaaacattgaaatatgactctatccccctccattcca 31227683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 372
Target Start/End: Original strand, 41809851 - 41810071
Alignment:
Q  162 aggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatg 261  Q
    ||||||||| |||| ||||| |||  ||||  || |||||||||| ||||| ||||||||||| |||||| ||| |||| | ||||| ||||||   |||    
T  41809851 aggggcaaaattgtaattgtcttattaatgcgttccattccattgaatacatcccaaattggggggaatggaaaattggatgaatgagtggtatatcatg 41809950  T
Q  262 gaatgagttccatcacactccattccattca----------ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcac 351  Q
    ||||| ||||||||||| |||||||||||||          ||||||||| |||||||||||||||  ||  ||||||||||||||||||||||||||||    
T  41809951 gaatgggttccatcacattccattccattcaattccactatttttttacaaaaccaaacaatggaacatgactctatcccactccattccattccatcac 41810050  T
Q  352 attccatcaatccaaacatag 372  Q
    || ||| ||||| ||||||||    
T  41810051 ataccaccaatcgaaacatag 41810071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 377
Target Start/End: Original strand, 35033802 - 35034001
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || |||||||||||||||| || || ||||| |||||| ||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||||    
T  35033802 aatgtgttccattccattggatacatcctaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttccatcacattccattcc 35033901  T
Q  288 att-catt----ttttacataaccaaacaatggaatgtggatctat-----cccactccattccattccatcacattccatcaatccaaacatagcctta 377  Q
    ||| ||||    |||| || |||||||||||||||| ||  | |||     |||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  35033902 attccattacaattttgcaaaaccaaacaatggaatctgactttattccaacccattccattccattccaccactctccatcaatccaaacatagcctta 35034001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 319
Target Start/End: Original strand, 4292595 - 4292761
Alignment:
Q  155 aaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggta 254  Q
    |||| |||||| |||| |||| |||||||||  ||||| ||  ||||||||||||||   |||||||| | |||||| |||  | ||||||  | |||||    
T  4292595 aaaaagtagggacaaaattgtaattgtattattaatgtgttatattccattggatac---ccaaattgaggggaatggaaaactagttaaaatagtggta 4292691  T
Q  255 ttggatggaatgagttccatcacac-----tccattccattcattttttacataaccaaacaatggaatg 319  Q
    |||||||||||||||||||||||||     |||||||||||  |||||| || |||||||||||||||||    
T  4292692 ttggatggaatgagttccatcacacaccattccattccattacttttttgcaaaaccaaacaatggaatg 4292761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 377
Target Start/End: Complemental strand, 25052711 - 25052615
Alignment:
Q  281 ccattccattcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcctta 377  Q
    |||||||||| |  ||||||| | |||||||||| ||||||     || ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  25052711 ccattccattaaaattttacaaatccaaacaatgaaatgtgacaaaataccacttcattccattccatcatattccatcaatccaaacatagcctta 25052615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 4342085 - 4342199
Alignment:
Q  255 ttggatggaatgagttccatcacactccattccattcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacatt 354  Q
    ||||||||||||  ||||||||   |||||||||||  ||||||||| |||||||||||||||| ||          ||||||||||||||||||  ||     
T  4342085 ttggatggaatggattccatcatgttccattccattacttttttacaaaaccaaacaatggaatttg----------actccattccattccatcttata 4342174  T
Q  355 ccatcaatccaaacatagccttagt 379  Q
    ||| ||||||||||| |||||||||    
T  4342175 ccaccaatccaaacaaagccttagt 4342199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 34495149 - 34495189
Alignment:
Q  335 ccattccattccatcacattccatcaatccaaacatagcct 375  Q
    ||||||||| ||||  |||||||||||||||||||||||||    
T  34495149 ccattccatcccattgcattccatcaatccaaacatagcct 34495189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 144 - 375
Target Start/End: Complemental strand, 11617422 - 11617181
Alignment:
Q  144 tgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggtta 243  Q
    ||||||||||||||| | ||||||| |||||| |||||||||   |||| || ||||||||||||||||| | || ||||| ||||||||||||||| |     
T  11617422 tgatgaaatagaaaacgcaggggcatagttgtcattgtattatttatgtattccattccattggatacacactaatttggggggaatgaaaatttggctt 11617323  T
Q  244 aatgaatggtattggatggaatgagttccatcacactccattcc-----attcattttttacataaccaaacaatggaatgtggatctatcccactccat 338  Q
    ||||  ||||||||||||||||||||||||||||||||||||||     ||||||||||| || |||||||||||||||| ||| | |||||||||||||    
T  11617322 aatgggtggtattggatggaatgagttccatcacactccattccattccattcattttttgcaaaaccaaacaatggaatatggttttatcccactccat 11617223  T
Q  339 tccattccat-----cacattccatcaatccaaacatagcct 375  Q
    ||||||||||     |||  ||||||||||||||||||||||    
T  11617222 tccattccattccaccactctccatcaatccaaacatagcct 11617181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 197 - 348
Target Start/End: Complemental strand, 4943662 - 4943506
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattca---- 292  Q
    |||||||||||| |||||||||||||||||||||| ||| |||    ||||| ||||||||||||||||| ||||||||||||||||||||||||         
T  4943662 cattccattggaaacaccccaaattgggtggaatggaaaattgaaggaatgagtggtattggatggaatgggttccatcacactccattccattccatcc 4943563  T
Q  293 -ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
     ||||||||| |||||||||||||||| ||| || |||||||||||||| |||||||    
T  4943562 cttttttacaaaaccaaacaatggaatatggctccatcccactccattctattccat 4943506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 188 - 379
Target Start/End: Complemental strand, 30085044 - 30084853
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || |||||||||||||||||||||| ||||| |||||| ||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||||    
T  30085044 aatgtgttccattccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttccatcacattccattcc 30084945  T
Q  288 att-catt----ttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagccttagt 379  Q
    ||| ||||    |||| || |||||||||||||||| ||  |||||     ||||| |||||||| |||  ||||||||||||||||||||||||||    
T  30084944 attccattacaattttgcaaaaccaaacaatggaatctgactctat-----tccatcccattccaccactctccatcaatccaaacatagccttagt 30084853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 7505998 - 7506134
Alignment:
Q  217 aaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactc-----cattccattcattttttacataaccaaaca 311  Q
    |||||||| |||||| ||| |||||||||||| ||||||||||||||||   |||||||||||||     ||||||||| |||||||||| |||||||||    
T  7505998 aaattggggggaatggaaaattggttaaatgagtggtattggatggaattgattccatcacactctatttcattccattaattttttacaaaaccaaaca 7506097  T
Q  312 atggaatgtggatctatcccactccattccattccat 348  Q
    ||||||||||| | |||||||||||||||||||||||    
T  7506098 atggaatgtggctttatcccactccattccattccat 7506134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 5247867 - 5248036
Alignment:
Q  177 attgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatca 276  Q
    |||||||||  ||||| || ||||| ||||| ||||||  ||||||| ||||||| ||| |||||| ||||| ||||||||||| ||||| |||||||||    
T  5247867 attgtattattaatgtgttccattctattgggtacaccttaaattggatggaatggaaaattggttgaatgagtggtattggattgaatgggttccatca 5247966  T
Q  277 cactccattccattcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
    || ||||||   ||  ||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||    
T  5247967 cattccatt--tttttttttttacaaaaccaaacaatggaatgtgactctatcccactcaattccattccat 5248036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 338
Target Start/End: Complemental strand, 9159603 - 9159425
Alignment:
Q  165 ggcaaagttgtgattgtattaacaatgtttttcattccattggat--acaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatgg 262  Q
    |||||| |||| | ||||||| |||||| || ||||| |||||||  ||||| |||||| || |||||| ||  |||| ||||||  |||||||||||||    
T  9159603 ggcaaaattgtaactgtattatcaatgtgttccattctattggatgcacacctcaaattagggggaatggaagattggataaatgggtggtattggatgg 9159504  T
Q  263 aatgagttccatcacactccattccattc---attttttacataaccaaacaatggaatgtggatctatcccactccat 338  Q
    |||| ||||||||||| |||||||| |||    ||||||||| |||||||||||||||  ||| |||||||||||||||    
T  9159503 aatgggttccatcacattccattcctttccattttttttacaaaaccaaacaatggaacatggctctatcccactccat 9159425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 31933435 - 31933565
Alignment:
Q  143 atgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggtt 242  Q
    ||||||||||||||||  || ||||||| |||| |||||||||  ||||| ||||||||||||| ||||||| |  ||| || |||||||||| ||| ||    
T  31933435 atgatgaaatagaaaaaatacgggcaaatttgtaattgtattattaatgtgtttcattccattgaatacacctctgattagg-ggaatgaaaaattgatt 31933533  T
Q  243 aaatgaatggtattggatggaatgagttccat 274  Q
      ||||||||||||||||||||||||||||||    
T  31933534 ggatgaatggtattggatggaatgagttccat 31933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 291
Target Start/End: Complemental strand, 29293306 - 29293204
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || ||||||| ||||||| |||||||||||| |||||||||||||| || ||||||||| |||||||||| || |||||||| |||||| ||||    
T  29293306 aatgtattccattccactggatac-ccccaaattggggggaatgaaaatttgatttaatgaatggcattggatggagtgggttccatcccactccgttcc 29293208  T
Q  288 attc 291  Q
    ||||    
T  29293207 attc 29293204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 41483547 - 41483506
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagcct 375  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  41483547 tccattccattccaccacattccatcaatccaaacatagcct 41483506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 16597823 - 16597862
Alignment:
Q  339 tccattccatcacattccatcaatccaaacatagccttag 378  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  16597823 tccattccattacattccatcaatccaaacatagccttag 16597862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 380
Target Start/End: Complemental strand, 8961781 - 8961588
Alignment:
Q  196 tcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatca-----cactccattccatt 290  Q
    ||||||||||  ||||||||||||||||| |||||||||||   |  | |||| ||| || ||||||||||  ||||||||     |||||||||||| |    
T  8961781 tcattccattctatacaccccaaattgggaggaatgaaaataaaggaagatga-tggaatgggatggaatggattccatcatataccactccattccact 8961683  T
Q  291 cattttttacataaccaaacaatggaatgtggatctatcccactccattccattccat-----cacattccatcaatccaaacatagccttagtt 380  Q
    ||||||||| ||| |||||||||||||      | ||| ||||||||| |||||||||     ||||| ||||||||||||||| ||||| ||||    
T  8961682 cattttttaaatatccaaacaatggaactctattatataccactccatcccattccattccaccacatgccatcaatccaaacaaagcctaagtt 8961588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 294
Target Start/End: Original strand, 10051186 - 10051335
Alignment:
Q  146 atgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccc-caaattgggtggaat-gaaaatttggtta 243  Q
    |||||||| ||||| ||||  ||||||||| ||||||||| ||||  || | |||| ||||||||||||  ||| ||| | | ||| ||||| || ||||    
T  10051186 atgaaataaaaaagataggaacaaagttgtaattgtattatcaattgttct-attctattggatacaccttcaagttgagggtaattgaaaactttgtta 10051284  T
Q  244 aatgaatggtattggatggaatgagttccatcacactccattccattcatt 294  Q
    ||  | ||||||||||  |||||||||||||||||||||||| ||||||||    
T  10051285 aagaagtggtattggactgaatgagttccatcacactccatttcattcatt 10051335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 375
Target Start/End: Complemental strand, 30699651 - 30699463
Alignment:
Q  196 tcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatca-----cactccattccatt 290  Q
    ||||||||||  ||||||||||||||||| |||||||||||   |  | |||| ||| || ||||||||||  ||||||||     |||||||||||| |    
T  30699651 tcattccattctatacaccccaaattgggaggaatgaaaataaaggaagatga-tggaatgggatggaatggattccatcatataccactccattccact 30699553  T
Q  291 cattttttacataaccaaacaatggaatgtggatctatcccactccattccattccat-----cacattccatcaatccaaacatagcct 375  Q
    ||||||||| ||| |||||||||||||      | ||| ||||||||| |||||||||     ||||| ||||||||||||||| |||||    
T  30699552 cattttttaaatatccaaacaatggaactctattatataccactccatcccattccattccaccacatgccatcaatccaaacaaagcct 30699463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 32025916 - 32025872
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagccttag 378  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||    
T  32025916 tccattccattccatcacatatcatcaatccaaacttagccttag 32025872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 160 - 375
Target Start/End: Original strand, 44076 - 44301
Alignment:
Q  160 gtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattgga 259  Q
    |||||| ||| ||||| ||||| |||  ||||| ||||||||||||||  ||||| ||||||||| |||||| ||| |||||||||||  ||||||||||    
T  44076 gtagggacaatgttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattgga 44175  T
Q  260 tggaatgagttccatcacactccattccattc-----attttttacataaccaaacaatggaatgtggatctatcccactcca-----ttccattccatc 349  Q
    ||||||| ||||||||||||||||||||||||     |||||||||| |||||||||||||||| ||||||||||||||||||     |||||||||| |    
T  44176 tggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatggatctatcccactccattccattccattccacc 44275  T
Q  350 acattccatcaatccaaacatagcct 375  Q
    ||  ||||||||||||||||||||||    
T  44276 actctccatcaatccaaacatagcct 44301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 160 - 375
Target Start/End: Original strand, 77797 - 78022
Alignment:
Q  160 gtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattgga 259  Q
    |||||| ||| ||||| ||||| |||  ||||| ||||||||||||||  ||||| ||||||||| |||||| ||| |||||||||||  ||||||||||    
T  77797 gtagggacaatgttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattgga 77896  T
Q  260 tggaatgagttccatcacactccattccattc-----attttttacataaccaaacaatggaatgtggatctatcccactcca-----ttccattccatc 349  Q
    ||||||| ||||||||||||||||||||||||     |||||||||| |||||||||||||||| ||||||||||||||||||     |||||||||| |    
T  77897 tggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatggatctatcccactccattccattccattccacc 77996  T
Q  350 acattccatcaatccaaacatagcct 375  Q
    ||  ||||||||||||||||||||||    
T  77997 actctccatcaatccaaacatagcct 78022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 144 - 375
Target Start/End: Complemental strand, 10354443 - 10354207
Alignment:
Q  144 tgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggtta 243  Q
    ||||||||||||||||| ||||||| |||||| |||||||||   |||| || ||||||||||||||||||  || ||||| ||||||||||||||| |     
T  10354443 tgatgaaatagaaaaggcaggggcatagttgtcattgtattatttatgtattccattccattggatacaccttaatttggggggaatgaaaatttggctt 10354344  T
Q  244 aatgaatggtattggatggaatgagttccatcacactccattccattca-----ttttttacataaccaaacaatggaatgtggatctatcccactccat 338  Q
    ||||  ||||||||||||||||||||| |||| |||||||||||||||      |||||| || || |||||||| |||| ||| | ||||| |||||||    
T  10354343 aatgggtggtattggatggaatgagtttcatcgcactccattccattccattccttttttgcaaaatcaaacaatagaatatggttttatcctactccat 10354244  T
Q  339 tccattccatcacattccatcaatccaaacatagcct 375  Q
    ||||||||| |||  ||||||||||||||||||||||    
T  10354243 tccattccaccactctccatcaatccaaacatagcct 10354207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 197 - 348
Target Start/End: Complemental strand, 28219153 - 28218997
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattca---- 292  Q
    ||||||||||||||||||||||||||||||||||||||| |||    ||||| ||||||||||||||||| ||||||||||||||||||||||||         
T  28219153 cattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccatcacactccattccattccatcc 28219054  T
Q  293 -ttttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
     ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||    
T  28219053 cttttttacaaaaccaaacaatggaatgtggctccatcccactccattccattccat 28218997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 44246475 - 44246347
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||| |||    ||||| ||||||||||||||||||||||||||||||||||||||    
T  44246475 aatgtgttccattccattggatacaccccaaattggatggaatgaaaaattgaaagaatgagtggtattggatggaatgagttccatcacactccattcc 44246376  T
Q  288 attcattttttacataaccaaacaatgga 316  Q
    |||| |||| |||| ||||||||||||||    
T  44246375 attccttttatacaaaaccaaacaatgga 44246347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 237 - 380
Target Start/End: Original strand, 7444711 - 7444864
Alignment:
Q  237 ttggttaaatgaatggtattggatggaatgagttccatcacactccattccattc-----attttttacataaccaaacaatggaatgtggatctatccc 331  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||     |||||||| | |||||||||||||||||||||| ||||||    
T  7444711 ttggttaaatgagtggtattggatggaatgggttccatcacactccattccattccattcattttttagaaaaccaaacaatggaatgtggatatatccc 7444810  T
Q  332 actcca-----ttccattccatcacattccatcaatccaaacatagccttagtt 380  Q
    ||||||     ||||||||||||||  |||||||||||||||| ||||| ||||    
T  7444811 actccattccattccattccatcactctccatcaatccaaacaaagcctcagtt 7444864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 1499181 - 1499310
Alignment:
Q  162 aggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatg 261  Q
    |||| |||| |||| |||||||||  ||||  || |||||||||||||||||| ||||||||| | ||| |||| |||||| ||||| ||||||||||||    
T  1499181 agggacaaaattgtaattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtattggatg 1499280  T
Q  262 gaatgagttccatcacactccattccattc 291  Q
    |||||| |||||||||||| ||||||||||    
T  1499281 gaatgaattccatcacactgcattccattc 1499310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 17999933 - 18000036
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || |||||||| ||||||||||||||||||  ||| ||||||||||| | ||||| ||||||||||| |||||  |||||||||||||||||||    
T  17999933 aatgtattccattccatcggatacaccccaaattggaggga-tgaaaatttggcttaatgagtggtattggatagaatggattccatcacactccattcc 18000031  T
Q  288 attca 292  Q
    |||||    
T  18000032 attca 18000036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 348
Target Start/End: Original strand, 28199199 - 28199364
Alignment:
Q  188 aatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc 287  Q
    ||||| || ||| |||||||||||||||||| ||||| |||||| ||| |||  | ||||| |||||||||||||||| |||||||||||| |||||||     
T  28199199 aatgtgttccatcccattggatacaccccaatttgggaggaatggaaaattgaatgaatgagtggtattggatggaataagttccatcacattccattcg 28199298  T
Q  288 att-catt----ttttacataaccaaacaatggaatgtggatctatcccactccattccattccat 348  Q
    ||| ||||    |||| || |||||||||||||||| ||  ||||| |||  ||||||||||||||    
T  28199299 attccattacaattttccaaaaccaaacaatggaatctgactctattccatcccattccattccat 28199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 6476868 - 6476766
Alignment:
Q  280 tccattccattcattttttacataaccaaacaatggaatgtggatctatcccactccattccattccat-----cacattccatcaatccaaacatagcc 374  Q
    |||||||| ||||| ||||||| |  ||||||||||||||||| |||||||||| ||||||||||||||     |||  |||||||||||||||||||||    
T  6476868 tccattccgttcatcttttacaaattcaaacaatggaatgtggctctatcccaccccattccattccattccaccactctccatcaatccaaacatagcc 6476769  T
Q  375 tta 377  Q
    |||    
T  6476768 tta 6476766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 14329002 - 14329091
Alignment:
Q  293 ttttttacataaccaaacaatggaatgtggatctatcccac-----tccattccattccatcacattccatcaatccaaacatagcctta 377  Q
    ||||||||| |||||||||||| |||||| ||||||| |||     |||||| |||||||||||  ||||||||| ||||||||||||||    
T  14329002 ttttttacaaaaccaaacaatgaaatgtgtatctatctcactcaattccatttcattccatcactctccatcaattcaaacatagcctta 14329091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 18000077 - 18000123
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagccttagtt 380  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||    
T  18000077 tccattccattccatcactctccatcaatccaaacatagtcttagtt 18000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 38022919 - 38023044
Alignment:
Q  196 tcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatca-----cactccattccatt 290  Q
    ||||||||||  ||||||||||||||||| |||||||||||   |  | ||| |||| || ||||||||||  ||||||||     |||||||||||| |    
T  38022919 tcattccattctatacaccccaaattgggaggaatgaaaataaaggaagatg-atggaatgggatggaatggattccatcatataccactccattccact 38023017  T
Q  291 cattttttacataaccaaacaatggaa 317  Q
    ||||||||| ||| |||||||||||||    
T  38023018 cattttttaaatatccaaacaatggaa 38023044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 10109244 - 10109206
Alignment:
Q  339 tccattccatcacattccatcaatccaaacatagcctta 377  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  10109244 tccattccatcccattccatcaatccaaacatagtctta 10109206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 44246339 - 44246301
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatag 372  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  44246339 tccattccattccatcactctccatcaatccaaacatag 44246301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 38023142 - 38023102
Alignment:
Q  196 tcattccattggatacaccccaaattgggtggaatgaaaat 236  Q
    ||||||||||  ||||||||||||||||| |||||||||||    
T  38023142 tcattccattctatacaccccaaattgggaggaatgaaaat 38023102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 133 - 375
Target Start/End: Complemental strand, 38679939 - 38679688
Alignment:
Q  133 ggaggagcagatgatgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatga 232  Q
    |||||||||| |||||||||||||||     ||| |||||||| |||||| ||  ||||| || ||||| ||||||||||||||||||| || |||||||    
T  38679939 ggaggagcagttgatgaaatagaaaaaaatagggtaaagttgtcattgtactattaatgtattccattcaattggatacaccccaaatttgg-ggaatga 38679841  T
Q  233 aaatttggttaaatgaatggtattggatggaatgagttccatcacactccattcc-----attcattttttacataaccaaacaatggaatgtggatcta 327  Q
    |||||||| | ||||| | |||||| |||||||||||||||||||||||||||||     |||||||||||||| |||||||||||||||  ||  | ||    
T  38679840 aaatttggcttaatgagtagtattgaatggaatgagttccatcacactccattccattctattcattttttacaaaaccaaacaatggaacatgatttta 38679741  T
Q  328 tc-----ccactccattccattccatcacattccatcaatccaaacatagcct 375  Q
    ||     ||||||||||||||||||||||  ||||||||||||||||||||||    
T  38679740 tctcactccactccattccattccatcactctccatcaatccaaacatagcct 38679688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 237 - 375
Target Start/End: Original strand, 42025384 - 42025527
Alignment:
Q  237 ttggttaaatgaatggtattggatggaatgagttccatcacactccattc-----cattcattttttacataaccaaacaatggaatgtggatctatccc 331  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||     ||||||||||||||| |||||||||||||||| ||||| ||||||    
T  42025384 ttggctaaatgagtggtattggatggaatgggttccatcacactccattcaattccattcattttttacaaaaccaaacaatggaatatggatatatccc 42025483  T
Q  332 actccattccattccatcacattccatcaatccaaacatagcct 375  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  42025484 actccattccattccatcactctccatcaatccaaacaaagcct 42025527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 197 - 373
Target Start/End: Original strand, 34924735 - 34924922
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtatt-ggatggaatgagttccatcacactccattccattc---- 291  Q
    ||||||||| |||||  ||||| ||||| ||||||||||  ||  ||||||| ||||||| |||||||||| ||||||||||||||||||||||||        
T  34924735 cattccattagatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggttccatcacactccattccattccatt 34924834  T
Q  292 -attttttacataaccaaacaatggaatgtggatctatcccactcca-----ttccattccatcacattccatcaatccaaacatagc 373  Q
     |||||||||||||||||||||||| |||||||| ||||||||||||     ||||||||||||||  ||||||||||||||||||||    
T  34924835 cattttttacataaccaaacaatgggatgtggatatatcccactccattccattccattccatcactctccatcaatccaaacatagc 34924922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 375
Target Start/End: Original strand, 14112331 - 14112521
Alignment:
Q  197 cattccattggatacaccccaaatt-gggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactc-----cattccatt 290  Q
    |||||||||||||||  ||| | || ||| ||||||||||  ||  ||||||| ||||||||||||||||  ||||||||||||||     |||||||||    
T  14112331 cattccattggatacctccccatttaggggggaatgaaaaaatgactaaatgagtggtattggatggaatcggttccatcacactctattccattccatt 14112430  T
Q  291 cattttttac-ataaccaaacaatggaatgtggatctatcccactcca-----ttccattccatcacattccatcaatccaaacatagcct 375  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||     ||||||||||||||  ||||||||||||||||||||||    
T  14112431 cattttttactataaccaaacaatgggatgtggatatatcccactccattccattccattccatcactctccatcaatccaaacatagcct 14112521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 30800273 - 30800170
Alignment:
Q  241 ttaaatgaatggtattggatggaatgagttccatcacactc-----cattccattcattttttacataaccaaacaatggaatgtggatctatcccactc 335  Q
    |||||||||||||||||||||||||||||||||||||||||     ||||||| || ||||||||| ||| ||||||| |||||| ||| |||| ||| |    
T  30800273 ttaaatgaatggtattggatggaatgagttccatcacactctatttcattccactccttttttacaaaactaaacaatagaatgttgatatatctcaccc 30800174  T
Q  336 catt 339  Q
    ||||    
T  30800173 catt 30800170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 348
Target Start/End: Original strand, 28873761 - 28873864
Alignment:
Q  250 tggtattggatggaatgagttccatcacactccattccatt-----cattttttacataaccaaacaatggaatgtggatctatcccactccattccatt 344  Q
    ||||||||||||||||  |||||||||||| ||||||||||     | ||||||||| |||||||||||  ||| ||| |||||||||||| |||| |||    
T  28873761 tggtattggatggaataggttccatcacacaccattccatttcattccttttttacaaaaccaaacaataaaatttggttctatcccactctattctatt 28873860  T
Q  345 ccat 348  Q
    ||||    
T  28873861 ccat 28873864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 20989695 - 20989651
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagccttag 378  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  20989695 tccattctattccatcatattccatcaatccaaacaaagccttag 20989651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 24944978 - 24944938
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagcc 374  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  24944978 tccattccattccatcacataccaccaatccaaacatagcc 24944938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 15820130 - 15820090
Alignment:
Q  277 cactccattccattcattttttacataaccaaacaatggaa 317  Q
    |||||||||||| |||||||||| ||| |||||||||||||    
T  15820130 cactccattccactcattttttaaatatccaaacaatggaa 15820090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 22531440 - 22531484
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagccttag 378  Q
    ||||||||||||||  |||  ||||||||||||||||||||||||    
T  22531440 tccattccattccactacaacccatcaatccaaacatagccttag 22531484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 22536125 - 22536169
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagccttag 378  Q
    ||||||||||||||  |||  ||||||||||||||||||||||||    
T  22536125 tccattccattccactacaacccatcaatccaaacatagccttag 22536169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 147 - 377
Target Start/End: Original strand, 38517 - 38742
Alignment:
Q  147 tgaaatagaaaaggtaggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaat 246  Q
    |||||||||||| ||||||  ||| |||| ||   ||||  ||||| || |||||||||||||||| |||||||||  ||||||||||| ||||   |||    
T  38517 tgaaatagaaaatgtagggataaaattgtaataaaattattaatgtgttccattccattggatacatcccaaattgaatggaatgaaaaattggaagaat 38616  T
Q  247 gaatggtattggatggaatgagttccatcacactccattccattcattttttacataaccaaacaatggaatgtggatctatcccactccattccattcc 346  Q
    || ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||  ||| || |||||||||||     ||||    
T  38617 gagtggtattggatggaatgggttccatcacactccattccattccttttttacaaaaccaaacaatggaacatggttccatcccactcca-----ttcc 38711  T
Q  347 atcacattccatcaatccaaacatagcctta 377  Q
    |||||  |||||||||| |||||||||||||    
T  38712 atcactctccatcaatcaaaacatagcctta 38742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 197 - 377
Target Start/End: Complemental strand, 57051 - 56861
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactc-----cattccattc 291  Q
    |||||||||||||||  ||||| ||||| ||||||||||  ||  ||||||| ||||||||||||||||  ||||||||||||||     ||||||||||    
T  57051 cattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtattggatggaattggttccatcacactctattccattccattc 56952  T
Q  292 attttttacataaccaaacaatggaatgtggatctatcccactccattccattcc-----atcacattccatcaatccaaacatagcctta 377  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||     |||||  ||||||||||||||||||||||||    
T  56951 attttttacataaccaaacaatgggatgtggatatatcccactccattccattcccttccatcactctccatcaatccaaacatagcctta 56861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 162 - 371
Target Start/End: Original strand, 30097 - 30316
Alignment:
Q  162 aggggcaaagttgtgattgtattaacaatgtttttcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatg 261  Q
    ||||||||| |||| ||||| |||  ||||| || |||| ||||||||||||||||||||||| |||||| ||| |||| | ||||| ||||||  ||||    
T  30097 aggggcaaaattgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatg 30196  T
Q  262 gaatgagttccatcacactccattccattca-----ttttttacataaccaaacaatggaatgtggatctatcccactcca-----ttccattccatcac 351  Q
    ||||| ||||||||||| ||||||||||||      ||||||||| |||||||||||||||  ||| || |||||||||||     ||||||||||||||    
T  30197 gaatgggttccatcacattccattccattccattatttttttacaaaaccaaacaatggaacatggctccatcccactccattccattccattccatcac 30296  T
Q  352 attccatcaatccaaacata 371  Q
    || ||| |||||||||||||    
T  30297 ataccaccaatccaaacata 30316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 197 - 377
Target Start/End: Original strand, 12417 - 12600
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatcacactccattccattc----- 291  Q
    ||||| |||||||||||| |||||||| ||||||| ||| |||    ||||| ||||||||||||||||| ||||||||||||||||||||||||         
T  12417 cattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttccatcacactccattccattccatta 12516  T
Q  292 ---attttttacataaccaaacaatggaatgtggatctatcccactccattccattccatcacattccatcaatccaaacatagcctta 377  Q
        ||||||||| ||||||||||||||||||||     |||||  ||| |||||||||||||  |||| |||||||||||||||||||    
T  12517 ttttttttttacaaaaccaaacaatggaatgtgg-----tcccatcccactccattccatcactctccaccaatccaaacatagcctta 12600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 232 - 341
Alignment:
Q  244 aatgaatggtattggatggaatgagttccatcacactccattccattc-at----tttttacataaccaaacaatggaatgtggatctatcccactccat 338  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| ||    |||||||| |||||||||||||||||||| || ||||||||| ||    
T  232 aatgagtggtattggatggaatgggttccatcacactccattccattccatcccatttttacaaaaccaaacaatggaatgtggctccatcccactcaat 331  T
Q  339 tccattccat 348  Q
    ||||||||||    
T  332 tccattccat 341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 9361 - 9398
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacata 371  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9361 tccattccattccatcacattccatcaatccaaacata 9398  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 10871359 - 10871282
Alignment:
Q  197 cattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccat 274  Q
    |||||||||| ||||| ||||||||| | |||||||||||||||   | ||| |||||||||||| |||| |||||||    
T  10871359 cattccattgcatacatcccaaattgaggggaatgaaaatttggaagagtgagtggtattggatgaaatgggttccat 10871282  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 29063558 - 29063515
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagcctta 377  Q
    ||||||||||||||||||||  || |||||||||||||||||||    
T  29063558 tccattccattccatcacatatcaccaatccaaacatagcctta 29063515  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 29118412 - 29118369
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagcctta 377  Q
    ||||||||||||||||||||  || |||||||||||||||||||    
T  29118412 tccattccattccatcacatatcaccaatccaaacatagcctta 29118369  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 375
Target Start/End: Complemental strand, 3639242 - 3639054
Alignment:
Q  196 tcattccattggatacaccccaaattgggtggaatgaaaatttggttaaatgaatggtattggatggaatgagttccatca-----cactccattccatt 290  Q
    ||||||||||  ||||||||||||||||| ||||| |||||   |  | |||| ||| || ||||||||||  ||||||||     |||||||||||| |    
T  3639242 tcattccattctatacaccccaaattgggaggaataaaaataaaggaagatga-tggaatgggatggaatggattccatcatataccactccattccact 3639144  T
Q  291 cattttttacataaccaaacaatggaatgtggatctatcccactccattccattccat-----cacattccatcaatccaaacatagcct 375  Q
    ||||||||| ||| |||||||||| ||  |   | ||| ||||||||| |||||||||     ||||| ||||||||||||||| |||||    
T  3639143 cattttttaaatatccaaacaatgaaactttattatataccactccatcccattccattccaccacatgccatcaatccaaacaaagcct 3639054  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 33091123 - 33091079
Alignment:
Q  334 tccattccattccatcacattccatcaatccaaacatagccttag 378  Q
    ||||||||||||||  |||  ||||||||||||||||||||||||    
T  33091123 tccattccattccactacaacccatcaatccaaacatagccttag 33091079  T

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