View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19024_low_9 (Length: 400)

Name: NF19024_low_9
Description: NF19024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19024_low_9
NF19024_low_9
[»] chr1 (10 HSPs)
chr1 (18-392)||(36988936-36989310)
chr1 (112-265)||(12804761-12804914)
chr1 (120-265)||(50789077-50789222)
chr1 (120-226)||(28496367-28496473)
chr1 (112-265)||(12774660-12774813)
chr1 (112-263)||(42286842-42286993)
chr1 (117-219)||(4160143-4160245)
chr1 (21-97)||(31644217-31644293)
chr1 (162-254)||(31644361-31644453)
chr1 (153-250)||(52371466-52371563)
[»] chr8 (3 HSPs)
chr8 (65-217)||(33186506-33186658)
chr8 (66-212)||(5788927-5789073)
chr8 (155-237)||(3271561-3271643)
[»] chr2 (4 HSPs)
chr2 (72-250)||(38896067-38896245)
chr2 (108-250)||(5435662-5435804)
chr2 (108-253)||(42898033-42898178)
chr2 (153-237)||(17858951-17859035)
[»] chr7 (2 HSPs)
chr7 (135-263)||(44151073-44151201)
chr7 (110-223)||(40749155-40749268)
[»] chr4 (1 HSPs)
chr4 (150-250)||(30518436-30518536)
[»] chr3 (2 HSPs)
chr3 (72-250)||(12105848-12106027)
chr3 (72-250)||(46987920-46988099)
[»] chr5 (2 HSPs)
chr5 (153-250)||(12938238-12938335)
chr5 (153-250)||(12952387-12952484)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 36989310 - 36988936
Alignment:
Q  18 ccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989310 ccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgtt 36989211  T
Q  118 ttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989210 ttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagc 36989111  T
Q  218 cattagtgttgttggtgatagtgctatcacttcagcacttggatctgtgccaaacatattaaacacgttaatatgtactatgtgtgaaacaaagnnnnnn 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  36989110 cattagtgttgttggtgatagtgctatcacttcagcacttggatctgtgccaaacatattaaacacgttaatatgtactatgtgtgaaacaaagaaaaaa 36989011  T
Q  318 nnnnnnntaggagtcaacaaaagtcaacagtgtacaacaattattggcaagacaataattgagtttcttcttctc 392  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989010 gaaaaaataggagtcaacaaaagtcaacagtgtacaacaattattggcaagacaataattgagtttcttcttctc 36988936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 12804761 - 12804914
Alignment:
Q  112 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtt 211  Q
    |||| ||||||||||||||||| |||||||||||||  || ||||| | |||||| || |||||||| || || | ||| | ||||||||| ||||||||    
T  12804761 tttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttgaaaccctttttgacacacttcacatacaaatctgtt 12804860  T
Q  212 tgtagccattagtgttgttggtgatagtgctatcacttcagcacttggatctgt 265  Q
    ||| |||||||| ||  |||| |||||||||||||| || |||  |||||||||    
T  12804861 tgttgccattagggtctttggagatagtgctatcacctctgcatctggatctgt 12804914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 265
Target Start/End: Original strand, 50789077 - 50789222
Alignment:
Q  120 agcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagcca 219  Q
    |||||||||||||||||||||||||||| ||| || || |||||||| |||||||| || || ||||| ||||  ||||| |  || |||||||| ||||    
T  50789077 agcttccaaggcaagttgtgtcctcttctgtgaagctgtagattttgctctctttggaaccctttgttgcatacctcacaaataaacctgtttgttgcca 50789176  T
Q  220 ttagtgttgttggtgatagtgctatcacttcagcacttggatctgt 265  Q
    |||| ||  | || |||||||||||||| || |||  |||||||||    
T  50789177 ttagggtcttgggagatagtgctatcacctctgcatctggatctgt 50789222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 28496367 - 28496473
Alignment:
Q  120 agcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagcca 219  Q
    |||||||| || | ||||||||||||||  || |||||||| ||||| |||||||| || || ||||| ||||||||||| | |||||||||||| ||||    
T  28496367 agcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttggaaccctttgttgcatatttcacagatgaatctgtttgttgcca 28496466  T
Q  220 ttagtgt 226  Q
    | |||||    
T  28496467 tgagtgt 28496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 265
Target Start/End: Complemental strand, 12774813 - 12774660
Alignment:
Q  112 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtt 211  Q
    |||| ||||||||||||||||| |||||||||||||  || ||||| | |||||| || ||||| || || || |  || | ||||||||| ||||||||    
T  12774813 tttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttggaaccctttttggcacacttcacatacaaatctgtt 12774714  T
Q  212 tgtagccattagtgttgttggtgatagtgctatcacttcagcacttggatctgt 265  Q
    ||| ||||||||  |  | || ||||||||||||||||| |||  |||||||||    
T  12774713 tgttgccattaggctcttgggagatagtgctatcacttctgcatctggatctgt 12774660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 42286993 - 42286842
Alignment:
Q  112 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtt 211  Q
    |||| |||||||||||||| |  |||||||||||||  || |||||||||||||| || |||||||| || || || || |  |||||||  ||||| ||    
T  42286993 tttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttgaaaccctttattgcaaacctcacatataaatctatt 42286894  T
Q  212 tgtagccattagtgttgttggtgatagtgctatcacttcagcacttggatct 263  Q
    ||| |||||||| ||  | || ||||||||||||||||| |||  |||||||    
T  42286893 tgttgccattagagtcttgggagatagtgctatcacttctgcatctggatct 42286842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 4160245 - 4160143
Alignment:
Q  117 tttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtag 216  Q
    ||||||||||| ||||| || ||||||||    || || ||||||||||| |||||||||||||| |||||||| || ||||| | ||| |||||||| |    
T  4160245 tttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaacctttgttacaaatctcacaaatgaacctgtttgttg 4160146  T
Q  217 cca 219  Q
    |||    
T  4160145 cca 4160143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 31644217 - 31644293
Alignment:
Q  21 gtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaacataaaccctctttctaat 97  Q
    |||||||| ||||| || |||| ||||||||| || ||||||||||| || |||||||||||| | |||||| ||||    
T  31644217 gtaagatctccaagagcccttgaagggttatgatgaacacatgaaggctctggacaaacataagctctctttttaat 31644293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 31644361 - 31644453
Alignment:
Q  162 ttttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttcagca 254  Q
    ||||| |||||||||||||||||||| || || ||||| || ||||| ||||| |  | ||||||  |||||||||  |||||||||||||||    
T  31644361 ttttgatctctttgaaaacccttgttgcagatctcacacacaaatctatttgttgttaatagtgtctttggtgataaagctatcacttcagca 31644453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 52371563 - 52371466
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| ||||||||| |||| ||||| | || | |||||||||  | |||||||||    
T  52371563 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgcttgttgccatcaatggttttggtgataaagatatcacttc 52371466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 33186658 - 33186506
Alignment:
Q  65 aggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattt 164  Q
    |||||||||||||||||||||||| || |||||||||  ||| | ||||||| | || ||||| || |  || ||||||||||  || |||||||||||     
T  33186658 aggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattc 33186559  T
Q  165 tggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagc 217  Q
    || ||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  33186558 tgatctctttgaaaccctttgttacatatttcacacacaaatctgtttgtagc 33186506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 5788927 - 5789073
Alignment:
Q  66 ggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagatttt 165  Q
    ||||| ||||| ||||| ||  |||||||||| |||  ||| ||||||||||| | |||||| || || || || ||||||| ||| |||||||||||||    
T  5788927 ggttctggacatacatatactttctttctaatctctttacttgttctttgtttcaacttccatggtaaattatgacctcttctgtgaagttgaagatttt 5789026  T
Q  166 ggtctctttgaaaacccttgttacatatttcacatacgaatctgttt 212  Q
    | ||||||||||| || ||||| || || ||||||| ||| ||||||    
T  5789027 gatctctttgaaaccctttgttgcagatctcacatatgaacctgttt 5789073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 3271561 - 3271643
Alignment:
Q  155 ttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgata 237  Q
    |||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||    
T  3271561 ttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgata 3271643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 38896067 - 38896245
Alignment:
Q  72 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 171  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| ||||| | ||| || |||||||||||||| || |    
T  38896067 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattttgatccc 38896166  T
Q  172 tttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||| ||||   ||| |||||||| |||||||||||||| ||||| | |||| |||||||||  | |||||||||    
T  38896167 tttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatgtttttggtgataaagatatcacttc 38896245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 5435662 - 5435804
Alignment:
Q  108 gttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatc 207  Q
    ||||||||||| ||||||||||| | ||| ||||| | ||| || |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||    
T  5435662 gttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatc 5435761  T
Q  208 tgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    ||||||| ||||| | || | |||||||||  | |||||||||    
T  5435762 tgtttgttgccatcaatggttttggtgataaagatatcacttc 5435804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 42898178 - 42898033
Alignment:
Q  108 gttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatc 207  Q
    |||||||| || | |||||| ||||| ||||||||||||   || ||||||||||| || ||||||||||| || |||||||| || ||||| | |||||    
T  42898178 gttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttgaaatcctttgttacagatctcacaaatgaatc 42898079  T
Q  208 tgtttgtagccattagtgttgttggtgatagtgctatcacttcagc 253  Q
    | ||||| ||||| |||||| |||| ||||  ||||| ||||||||    
T  42898078 tatttgttgccatcagtgtttttggcgataaggctataacttcagc 42898033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 17859035 - 17858951
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgata 237  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||    
T  17859035 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatgcttttggtgata 17858951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 44151073 - 44151201
Alignment:
Q  135 ttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtg 234  Q
    ||||| ||||||||||| |  |||||||| ||||| || |||||||||||||||||||| ||||| || ||||| ||||| ||||||| ||||||||| |    
T  44151073 ttgtgacctcttcggtgtaactgaagattctggtccctctgaaaacccttgttacatatctcacacacaaatctatttgttgccattaatgttgttggag 44151172  T
Q  235 atagtgctatcacttcagcacttggatct 263  Q
    ||| ||| | |||||||||| | ||||||    
T  44151173 ataatgcaaccacttcagcagtaggatct 44151201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 40749268 - 40749155
Alignment:
Q  110 tctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctg 209  Q
    |||||| ||||||||||| || | |||||| |||||||  || || |||||||| || |||||||| || || ||||| |||||||| || ||||||| |    
T  40749268 tctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttggaatcctttgttgcatatttcgcagacgaatcgg 40749169  T
Q  210 tttgtagccattag 223  Q
    || || ||||||||    
T  40749168 ttcgtggccattag 40749155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 30518436 - 30518536
Alignment:
Q  150 tgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcactt 249  Q
    ||||||||||||||||| |||||||||||||| ||   |||| ||||||| | |||||||||||||||||| |||||  |||||||||  ||||| ||||    
T  30518436 tgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataactt 30518535  T
Q  250 c 250  Q
    |    
T  30518536 c 30518536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 12106027 - 12105848
Alignment:
Q  72 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 171  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| | ||| | ||| || |||||||||||||| |  |    
T  12106027 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcc 12105928  T
Q  172 tttgaaaacccttgt-tacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||| |||| |  ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  12105927 tttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 12105848  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 46987920 - 46988099
Alignment:
Q  72 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 171  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| | ||| | ||| || |||||||||||||| |  |    
T  46987920 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcc 46988019  T
Q  172 tttgaaaacccttgt-tacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||| |||| |  ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  46988020 tttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 46988099  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 12938335 - 12938238
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  12938335 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 12938238  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 12952484 - 12952387
Alignment:
Q  153 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttc 250  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| ||||| | || | |||||||||  | |||||||||    
T  12952484 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttc 12952387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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