View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19025_high_13 (Length: 441)
Name: NF19025_high_13
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 85 - 440
Target Start/End: Original strand, 23768721 - 23769075
Alignment:
| Q |
85 |
ccagaagaatgcagcagatcagaatcacataaaaatataatgcacccagcagcctaaccgcttttatagagaaacgaaaaaaccagaaacagaacgatga |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||||| |
|
|
| T |
23768721 |
ccagaagaatgcagcagatcagaatcacataaaaacataatgcacccagcagccgaaccgcttttatacagcaacgaaaacaccagaaacagaatgatga |
23768820 |
T |
|
| Q |
185 |
agaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaattgtgcaaacaaaacagaaacactaaaaattg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
23768821 |
agaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattg |
23768920 |
T |
|
| Q |
285 |
cagcaaactaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggagatgaacacgct |
384 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23768921 |
cagcaaattaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgct |
23769020 |
T |
|
| Q |
385 |
aatagaataagtaagatagcattattcagtaccagaataattaccttcaaaggttt |
440 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
23769021 |
aatagaataattaagatagcattattcag-accaaaataattaccttcaaaggttt |
23769075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 85 - 440
Target Start/End: Original strand, 23818569 - 23818923
Alignment:
| Q |
85 |
ccagaagaatgcagcagatcagaatcacataaaaatataatgcacccagcagcctaaccgcttttatagagaaacgaaaaaaccagaaacagaacgatga |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||||| |
|
|
| T |
23818569 |
ccagaagaatgcagcagatcagaatcacataaaaacataatgcacccagcagccgaaccgcttttatacagcaacgaaaacaccagaaacagaatgatga |
23818668 |
T |
|
| Q |
185 |
agaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaattgtgcaaacaaaacagaaacactaaaaattg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
23818669 |
agaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattg |
23818768 |
T |
|
| Q |
285 |
cagcaaactaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggagatgaacacgct |
384 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23818769 |
cagcaaattaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgct |
23818868 |
T |
|
| Q |
385 |
aatagaataagtaagatagcattattcagtaccagaataattaccttcaaaggttt |
440 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
23818869 |
aatagaataattaagatagcattattcag-accaaaataattaccttcaaaggttt |
23818923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 85 - 437
Target Start/End: Complemental strand, 23645391 - 23645037
Alignment:
| Q |
85 |
ccagaagaatgcagcagatcagaatcacataaaaatataatgcacccagcagcctaaccgcttttatagagaaacg-aaaaaaccagaaacagaacgatg |
183 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| | ||||| ||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
23645391 |
ccagaagaatgcagcagatcaaaatcacataaaac-ataatgcacgctgcagcggaactgcttttatgcagaaacggaaaaaaccagaaacagaacgatg |
23645293 |
T |
|
| Q |
184 |
aagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaattgtgcaaacaaaacagaaacactaaaaatt |
283 |
Q |
| |
|
| ||| ||| ||||||| |||||||||| ||| ||| ||| ||||| || ||| ||| | ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
23645292 |
acgaaaatattgcagaaatgcagaataacggaatcagaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaatt |
23645194 |
T |
|
| Q |
284 |
gcagcaaactaaagtgattat---gcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggagatgaaca |
380 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
23645193 |
gcagcaaactaaaatgattattatgcagaaatttaaaccaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtaca |
23645094 |
T |
|
| Q |
381 |
cgctaatagaataagtaagatagcattattcagtaccagaataattaccttcaaagg |
437 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||| ||||| ||||||| |||||||||| |
|
|
| T |
23645093 |
cgctaatagaataaataagatatcattgttcactaccaaaataattcccttcaaagg |
23645037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 85 - 437
Target Start/End: Original strand, 23813183 - 23813537
Alignment:
| Q |
85 |
ccagaagaatgcagcagatcagaatcacataaaaatataatgcacccagcagcctaaccgcttttatagagaaacg-aaaaaaccagaaacagaacgatg |
183 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| | ||||| ||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
23813183 |
ccagaagaatgcagcagatcaaaatcacataaaac-ataatgcacgctgcagcggaactgcttttatgcagaaacggaaaaaaccagaaacagaacgatg |
23813281 |
T |
|
| Q |
184 |
aagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaattgtgcaaacaaaacagaaacactaaaaatt |
283 |
Q |
| |
|
| ||| ||| ||||||| |||||||||| ||| ||| ||| ||||| || ||| ||| | ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
23813282 |
acgaaaatattgcagaaatgcagaataacggaatcagaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaatt |
23813380 |
T |
|
| Q |
284 |
gcagcaaactaaagtgatta---tgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggagatgaaca |
380 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
23813381 |
gcagcaaactaaaatgattattatgcagaaatttaaaccaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtaca |
23813480 |
T |
|
| Q |
381 |
cgctaatagaataagtaagatagcattattcagtaccagaataattaccttcaaagg |
437 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||| ||||| ||||||| |||||||||| |
|
|
| T |
23813481 |
cgctaatagaataaataagatatcattgttcactaccaaaataattcccttcaaagg |
23813537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 154 - 440
Target Start/End: Original strand, 23780039 - 23780325
Alignment:
| Q |
154 |
agaaacgaaaaaaccagaaacagaacgatgaagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaat |
253 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||| |||||||||| | | |||||| |
|
|
| T |
23780039 |
agaaacgaaaaaaccagaaacaaaacgatgaagaaaatatcgcagaaacgcagaataacagaaccagaaatgaacacattgaaataaagcacagcagaaa |
23780138 |
T |
|
| Q |
254 |
tgtgcaaacaaaacagaaacactaaaaattgcagcaaactaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaa |
353 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
23780139 |
tgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaagaacgcgacagtgaaaatatcgaagtaattaa |
23780238 |
T |
|
| Q |
354 |
aaccaagattacgagaggagatgaacacgctaatagaataagtaagatagcattattcagtaccagaataattaccttcaaaggttt |
440 |
Q |
| |
|
||||| |||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| || ||||||| |||||||| |||| |
|
|
| T |
23780239 |
aaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaataattcccttcaaaagttt |
23780325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 154 - 440
Target Start/End: Original strand, 23866992 - 23867278
Alignment:
| Q |
154 |
agaaacgaaaaaaccagaaacagaacgatgaagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaat |
253 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||| |||||||||| | | |||||| |
|
|
| T |
23866992 |
agaaacgaaaaaaccagaaacaaaacgatgaagaaaatatcgcagaaacgcagaataacagaaccagaaatgaacacattgaaataaagcacagcagaaa |
23867091 |
T |
|
| Q |
254 |
tgtgcaaacaaaacagaaacactaaaaattgcagcaaactaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaa |
353 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
23867092 |
tgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaagaacgcgacagtgaaaatatcgaagtaattaa |
23867191 |
T |
|
| Q |
354 |
aaccaagattacgagaggagatgaacacgctaatagaataagtaagatagcattattcagtaccagaataattaccttcaaaggttt |
440 |
Q |
| |
|
||||| |||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| || ||||||| |||||||| |||| |
|
|
| T |
23867192 |
aaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaataattcccttcaaaagttt |
23867278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 154 - 423
Target Start/End: Complemental strand, 23730164 - 23729895
Alignment:
| Q |
154 |
agaaacgaaaaaaccagaaacagaacgatgaagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaat |
253 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||| |||||||||| | ||||||||| |
|
|
| T |
23730164 |
agaaacgaaaaaaccagaaacaaaacgatgaagaaaatatggcagaaacgcagaataacagaaccagaaatgaacacattgaaataaagcactgcagaat |
23730065 |
T |
|
| Q |
254 |
tgtgcaaacaaaacagaaacactaaaaattgcagcaaactaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaa |
353 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||| |
|
|
| T |
23730064 |
tgtgcaaacaaaacagaaacgttaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtgaaaatattgaagaatttaa |
23729965 |
T |
|
| Q |
354 |
aaccaagattacgagaggagatgaacacgctaatagaataagtaagatagcattattcagtaccagaata |
423 |
Q |
| |
|
||||| |||| |||| |||||||| |||| ||||||| || || ||||| |||||| ||||||| |||| |
|
|
| T |
23729964 |
aaccatgatttagagacgagatgaatacgccaatagaacaaatacgatagaattatttagtaccaaaata |
23729895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 154 - 423
Target Start/End: Complemental strand, 23733036 - 23732767
Alignment:
| Q |
154 |
agaaacgaaaaaaccagaaacagaacgatgaagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaat |
253 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||| |||||||||| | ||||||||| |
|
|
| T |
23733036 |
agaaacgaaaaaacaagaaacaaaacgatgaagaaaatatcgcagaaacgcagaataacagaaccagaaatgaacacgttgaaataaagcactgcagaat |
23732937 |
T |
|
| Q |
254 |
tgtgcaaacaaaacagaaacactaaaaattgcagcaaactaaagtgattatgcagaaatttaaaccaagaacgcaacagttaaaatatcgaagaaattaa |
353 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||| |
|
|
| T |
23732936 |
tgtgcaaacaaaacagaaacgctaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtgaaaatatcaaagaatttaa |
23732837 |
T |
|
| Q |
354 |
aaccaagattacgagaggagatgaacacgctaatagaataagtaagatagcattattcagtaccagaata |
423 |
Q |
| |
|
|| || |||| |||| || ||||| |||| |||||| || || ||||| |||||| ||||||| |||| |
|
|
| T |
23732836 |
aagcatgatttagagacgaaatgaatacgcctatagaacaaatacgatagaattatttagtaccaaaata |
23732767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 161 - 440
Target Start/End: Complemental strand, 23674698 - 23674408
Alignment:
| Q |
161 |
aaaaaaccagaaacagaacgatgaagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaattgtgcaa |
260 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| |||||| | |||||||||||||||| || || || || ||||||| | |||||||||||||||| |
|
|
| T |
23674698 |
aaaaaaccagaaatagaatgatgaagaaaatatcgcagaaatgaagaataacagaaccagaaaagaatacattaaaataaagcactgcagaattgtgcaa |
23674599 |
T |
|
| Q |
261 |
acaaaacagaaacactaaaaattgcagcaaactaaagtg---attatgcagaaa-tttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaac |
356 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23674598 |
acaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaacgcaacagtgaaaatatcgaagaaattaaaac |
23674499 |
T |
|
| Q |
357 |
caagatta-------cgagaggagatgaacacgctaatagaataagtaagatagcattattcagtaccagaataattaccttcaaaggttt |
440 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||| ||| |||||| ||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
23674498 |
caagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattgttcagtaccaaaataattcccttcaaaggttt |
23674408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 161 - 440
Target Start/End: Original strand, 23860113 - 23860403
Alignment:
| Q |
161 |
aaaaaaccagaaacagaacgatgaagaatatactgcagaaccgcagaataacagaaccagtaatcaacaccttgaaataaaccgctgcagaattgtgcaa |
260 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| |||||| | |||||||||||||||| || || || || ||||||| | |||||||||||||||| |
|
|
| T |
23860113 |
aaaaaaccagaaatagaatgatgaagaaaatatcgcagaaatgaagaataacagaaccagaaaagaatacattaaaataaagcactgcagaattgtgcaa |
23860212 |
T |
|
| Q |
261 |
acaaaacagaaacactaaaaattgcagcaaactaaagtg---attatgcagaaa-tttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaac |
356 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23860213 |
acaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaacgcaacagtgaaaatatcgaagaaattaaaac |
23860312 |
T |
|
| Q |
357 |
caagatta-------cgagaggagatgaacacgctaatagaataagtaagatagcattattcagtaccagaataattaccttcaaaggttt |
440 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||| ||| |||||| ||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
23860313 |
caagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattgttcagtaccaaaataattcccttcaaaggttt |
23860403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 23779998 - 23780030
Alignment:
| Q |
156 |
aaacgaaaaaaccagaaacagaacgatgaagaa |
188 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
23779998 |
aaacgaaaataccagaaacagaacgatgaagaa |
23780030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 23866951 - 23866983
Alignment:
| Q |
156 |
aaacgaaaaaaccagaaacagaacgatgaagaa |
188 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
23866951 |
aaacgaaaataccagaaacagaacgatgaagaa |
23866983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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