View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_high_16 (Length: 427)
Name: NF19025_high_16
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 197 - 410
Target Start/End: Complemental strand, 8005569 - 8005360
Alignment:
| Q |
197 |
cccagtaattgaggaagaacacttgctggttgtgaagcaacgtaccaacaagatattaattggtagaagaaaagaatgttcactttcattttatggtggt |
296 |
Q |
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| T |
8005569 |
cccagtaattgaggaagaacacttgctggttgtgaagcaacgtaccaacaagatatt----ggtagaagaaaagaatgttcactttcattttatggtggt |
8005474 |
T |
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| Q |
297 |
gaaaggcttttcgaataaattggaaggaaattggttcaaaataattccgatctagaagcaaataagggaggcttatatatttttgtaaaatagagggggt |
396 |
Q |
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| T |
8005473 |
taaaggcttttcgaataaattggaaggaaattggttcaaaataattccgatctggaagcaaataagggaggcttatgtatttttgtaaaatagagggggt |
8005374 |
T |
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| Q |
397 |
atttgtgacataag |
410 |
Q |
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| T |
8005373 |
atttgtgacataag |
8005360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 8005735 - 8005633
Alignment:
| Q |
24 |
atgatcggttttccccagtgtgacggtggatcgacaaatttcattttcataaacaatggcgagtgaattaataacgctaacagtgcacttgggggtcggt |
123 |
Q |
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| T |
8005735 |
atgatcggttttccccaatgtgacgg-------acaaatttcattttcataaacaatggcgagtgaattaataacgttaacagtgcacttgggggtcgtt |
8005643 |
T |
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| Q |
124 |
gtgattgcca |
133 |
Q |
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| T |
8005642 |
gtgattgcca |
8005633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9849235 - 9849178
Alignment:
| Q |
18 |
caatttatgatcggttttccccagtgtgacggtggatcgacaaatttcattttcataa |
75 |
Q |
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| T |
9849235 |
caatttattattggttttcaccaatgtatcggtggatcgacaaatttcattttcataa |
9849178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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