View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_high_17 (Length: 421)
Name: NF19025_high_17
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 421
Target Start/End: Original strand, 35828823 - 35829241
Alignment:
| Q |
15 |
aatattcaagttctagtatacacaaaataaaatgagaccaaatagactcaaatggataaaactgtgcatgtaaaatgtgaaattttgttccttatttata |
114 |
Q |
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| T |
35828823 |
aatattcaagttctagtatacacaaaataaaatgagaccaaatagactcaaatggataaaactgtgcatgtaaaatgtgaaattttgttccttatttata |
35828922 |
T |
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| Q |
115 |
aatattttacccnnnnnnnaaactcggtat---------------ctatagataaattgtagtgtttaattttatttcaaaatagccataggacaggaat |
199 |
Q |
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| T |
35828923 |
aat-ttttaccc-ttttttaaactcagtatctaatcaattatcgactatagataaattgtagtgtttaattttatttcaaaatagccataggacaggaat |
35829020 |
T |
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| Q |
200 |
ataatagcggtgtatataaacgnnnnnnnnnttgttactcatagaatatgagaaaatttgggtttttttcttcnnnnnnnnnttgagaaaacttggacaa |
299 |
Q |
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| T |
35829021 |
ataatagcggtgtatataaacg-aaaaaaaattgttactcaaagaatatgagaaaatttgggtttttttcttcaaaaaaaaattgagaaaacttggacaa |
35829119 |
T |
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| Q |
300 |
cacgtnnnnnnnnttcattacatctaattttctatttaaaatcaagattcaaccatattaaatttcatattagtgaccaatgaggctacgtctagcaaca |
399 |
Q |
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| T |
35829120 |
catgtaaaaaaatttcattgcatataattttctatttaaaatcaagattcaaccgtattaaatttcatattagtgaccaatgaggctacgtctagcaaca |
35829219 |
T |
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| Q |
400 |
aaggagaatgaaaaagacacaa |
421 |
Q |
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| T |
35829220 |
aaggagaatgaaaaagacacaa |
35829241 |
T |
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