View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19025_high_22 (Length: 379)

Name: NF19025_high_22
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19025_high_22
NF19025_high_22
[»] chr4 (1 HSPs)
chr4 (14-379)||(25548865-25549231)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 25548865 - 25549231
Alignment:
Q  14 atcaaaagcgactttccaacctgaaaaccaaa-tcaaacccaataaaaatacaacctttaccaccaattaacctcaaccccaattataaaaaccaaaact 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25548865 atcaaaagcgactttccaacctgaaaaccaaaatcaaacccaataaaaatacaacctttaccaccaattaacctcaaccccaattataaaaaccaaaact 25548964  T
Q  113 tcaaaaacactataacacaatgcacacctggggaggaccctgaacaacgataacgaaaggaggcggttcaccataagaacgatcaatgatgggaagatga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25548965 tcaaaaacactataacacaatgcacacctggggaggaccctgaacaacgataacgaaaggaggcggttcaccataagaacgatcaatgatgggaagatga 25549064  T
Q  213 agacggcgctgttctttctcgacggcgcgtgattgcaatttcttaacttttttagatgaagaataagcaaaagctttagggttttgcataatctgaccat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25549065 agacggcgctgttctttctcgacggcgcgtgattgcaatttcttaacttttttagatgaagaataagcaaaagctttagggttttgcataatctgaccat 25549164  T
Q  313 catcaccatcgccatcttgcttcttcctggatttggttttcttctttggaccagcttgacgagttct 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25549165 catcaccatcgccatcttgcttcttcctggatttggttttcttctttggaccagcttgacgagttct 25549231  T

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