View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19025_high_24 (Length: 350)
Name: NF19025_high_24
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 49410919 - 49411176
Alignment:
| Q |
1 |
tagctgttggttttgaaggaatgatacggtttgagaaaacaccagaaaaaggagggtcgtaagagaatgttgggtcagcatgaatgtagatattgtacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49410919 |
tagctgttggttttgaaggaatgatacggtttgagaaaacaccagaaaaaggagggtcgtaagagaatgttgggtcagcatgaatgtagatattgtacaa |
49411018 |
T |
|
| Q |
101 |
nnnnnnngggatttggttgaagtaagattcccataatgaagcaaatggaagaggagttgttgttaagaacatgaatgctaattttcttggccatgttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49411019 |
tttttttgggatttggttgaagtaagattcccataatgaagcaaatggaagaggagttgttgttaagaacatgaatgctaattttcttggccatgttgct |
49411118 |
T |
|
| Q |
201 |
tttcgctttgtatggttggctacaatgaacaacgtttcctcttctttgtattcgtcta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49411119 |
tttcgctttgtatggttggctacaatgaacaacgtttcctcttctttgtattcgtcta |
49411176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 49411211 - 49411253
Alignment:
| Q |
293 |
agtatttatacttaagaaagtggttgtgaggtttgggtttgat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49411211 |
agtatttatacttaagaaagtggttgtgaggtttgggtttgat |
49411253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University