View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19025_high_29 (Length: 294)
Name: NF19025_high_29
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 39736339 - 39736073
Alignment:
| Q |
11 |
cacagactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39736339 |
cacaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaa |
39736240 |
T |
|
| Q |
111 |
caaagagccttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaatcagcacaaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39736239 |
caaagagccttccaacataactgccatagaaggaaaatacatttgaagtcaactcaggtccaccttgtacaccaacaaatattaaaatcagcacaaaaaa |
39736140 |
T |
|
| Q |
211 |
ttattcagtaccgcagctcttctttttcaggatcatataacttgnnnnnnngtaatatgtcatgctt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39736139 |
ttattcagtaccgcagctcttctttttcaggatcatataacttgaaaaaaagtaatatgtcatgctt |
39736073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 39847561 - 39847795
Alignment:
| Q |
19 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
118 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||||||||||||||||| | ||| ||| ||| |||| || |||| | ||||| ||||||||| |
|
|
| T |
39847561 |
aacctcataaagttcgatatcttcatcaggatcataaccagccaatttatttaactttgttaagatttctgatggtttaccagtacagtcgacaaagagc |
39847660 |
T |
|
| Q |
119 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaatcagcacaaaaaattattcag |
218 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| | ||||||||| ||| ||||| || ||||||||| || || ||||||||||| |
|
|
| T |
39847661 |
cttccagcataactgccatagaagggaaatacatttgatgtcaactaaagtccaccttttaccgcaacatatgttaaaatca-caaaagaaattattcag |
39847759 |
T |
|
| Q |
219 |
taccgcagctcttctttttcaggatcatataacttg |
254 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
39847760 |
taccgtagctcctctctttcaggatcatataacttg |
39847795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 39910935 - 39911171
Alignment:
| Q |
19 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
118 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||||||||||||||| | ||| ||| ||| ||| || ||| | |||||| |||| |||| |
|
|
| T |
39910935 |
aacctcgtatagttcaatctcttcatcaggatcataaccagccaatttatttaactttgttaagatttgtgatggcttatcagtacagtttacaaggagc |
39911034 |
T |
|
| Q |
119 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatatt-aaaatcagcacaa-aaaattattc |
216 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| ||| |||||| || || ||||||| ||||| ||||||| || |
|
|
| T |
39911035 |
cttccaacataactgccatcaaagggaaatacatttgatgtcaactaaggtccatcttttaccccaacatatgttaaaaatca-cacaagaaaattactc |
39911133 |
T |
|
| Q |
217 |
agtaccgcagctcttctttttcaggatcatataacttg |
254 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
39911134 |
agtaccgtagctccattctttcaggatcatataacttg |
39911171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 39864586 - 39864818
Alignment:
| Q |
19 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| ||| |||| || ||| | |||||| ||||||| | |
|
|
| T |
39864586 |
aacctcataaagttcaatctcttcatcaggatcataaccagccaatttatttaagctagttaagatttctgatggcttatcagtacagttcacaaagaac |
39864685 |
T |
|
| Q |
119 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaatcagcacaaaaaattattcag |
218 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||||| |||||| ||||||||| | ||| |||| || || |||||| ||||| ||||||||||| |
|
|
| T |
39864686 |
cttccagcataactgccata-aagggaaatacatttcgaatcaactaaggtccaccgtttaccagaacatatgtt-aaatca-cacaataaattattcag |
39864782 |
T |
|
| Q |
219 |
taccgcagctcttctttttcaggatcatataacttg |
254 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39864783 |
taccgtagctcctctttttcaggatcatataacttg |
39864818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 39898168 - 39898409
Alignment:
| Q |
19 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||| ||| ||| |||| || |||| |||||| ||||||||| |
|
|
| T |
39898168 |
aacctcataaagttcaatctcttcatcaggatcaaaaccagccaaattatttaaacttgttaagatttctgatggtttaccggtacagttcacaaagagc |
39898267 |
T |
|
| Q |
119 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttg--------tacaccaacaaatattaaaatcagcacaaaaaa |
210 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||| |||||| ||||||| |||| ||| |||| | || ||||||||| ||||| ||| |
|
|
| T |
39898268 |
cttccaacataactgccatcaaatggaaatacatttgatatcaactaaggtccatcttgtccacctttaccccaaaatatgttaaaatca-cacaagaaa |
39898366 |
T |
|
| Q |
211 |
ttattcagtaccgcagctcttctttttcaggatcatataactt |
253 |
Q |
| |
|
||| | |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
39898367 |
ttactaagtaccatagctcctctttttcaggatcatataactt |
39898409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 37465990 - 37466156
Alignment:
| Q |
19 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||| |||| || |||| | || |||||||| |
|
|
| T |
37465990 |
aacctcataaagtccaatctcttcttcaggatcataaccagccattttatttaaccttgctaagatttctgatggtttaccagtgttattcacaaagagt |
37466089 |
T |
|
| Q |
119 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaa |
185 |
Q |
| |
|
|| |||||| ||||||||| |||| ||| |||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
37466090 |
ctgccaacaaaactgccatcaaagggaaaaacatttgatgtcaactcaggtccatcttctaccccaa |
37466156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 39857390 - 39857575
Alignment:
| Q |
19 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| || || |||| || ||| | |||||| |||| ||| |
|
|
| T |
39857390 |
aacctcataaagttcaatctcttcattaggatcataaccagccaatttatttaaccttgccaagatatctgatggcttatccttacagttcacaataagc |
39857489 |
T |
|
| Q |
119 |
cttccaacataact----gccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaatca |
200 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||| ||||||||||| |||||||||| ||| ||||| || ||||||||| |
|
|
| T |
39857490 |
cttccaacataactgccagccaccaaagggaaatacatatgatgtcaactatggtccaccttttacctcaacatatgttaaaatca |
39857575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 36059330 - 36059212
Alignment:
| Q |
19 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
118 |
Q |
| |
|
||||||||||||| |||| ||||| ||| || |||||||||||| || ||||| ||||| ||| ||| |||| || || | | ||| || ||||||||| |
|
|
| T |
36059330 |
aacctcataaagtacaatatcttcttcaggaacataaccagccatttcatttagccttgttaagatttctgatggcttgccagtacacttcacaaagagc |
36059231 |
T |
|
| Q |
119 |
cttccaacataactgccat |
137 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
36059230 |
cttccaacatagctgccat |
36059212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 36059151 - 36059110
Alignment:
| Q |
208 |
aaattattcagtaccgcagctcttctttttcaggatcatata |
249 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
36059151 |
aaattactcagtaccgaagctcctctttttcaggatcatata |
36059110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University