View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19025_high_33 (Length: 254)
Name: NF19025_high_33
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 35291618 - 35291406
Alignment:
| Q |
28 |
accaatttagggtaaataccaaactgattcattatgaaattaagactagaaaat---aatcgcctctttgtaaatgaatttcttgtgttctgtagtttgt |
124 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35291618 |
accaattaagggtaaataccaaactgattcattatgaaattaagactagaaaattataatcgcctctttgtaaatgaatttcttgtgttctgtagtttgt |
35291519 |
T |
|
| Q |
125 |
atccaaaacaaaatacagaaaccttacatattgtgtatattgcatggaattgtatcaaattttctcttttcccttacaaaaagctttctacttaaaacct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35291518 |
atccaaaacaaaatacagaaaccttacatattgtgtatattgcatggaattgtatcaaattttctcttttcctttacaaaaagctttctacttaaaacct |
35291419 |
T |
|
| Q |
225 |
tatgcatattgtt |
237 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35291418 |
tatgcatattgtt |
35291406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University