View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_high_35 (Length: 249)
Name: NF19025_high_35
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 6937800 - 6937570
Alignment:
| Q |
19 |
gtgacaaggggagataaagagagatttgtatatgttcttttcacaataccaaaggatagtgctgtcattaaggccccctctgagttggtggatgaggaaa |
118 |
Q |
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| T |
6937800 |
gtgacaaggggagataaagagagatttgtatatgttcttttcacaataccaaaggatagtgctgtcattaaggccccctctgagttggtggatgaggaaa |
6937701 |
T |
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| Q |
119 |
attacccgcttcgttatcggtcattcaaatatggagactacgtacattatcaatattcaactagaacacaaaaggaacgacttgaaagttatgctgaaat |
218 |
Q |
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| T |
6937700 |
attaccctcttcgttatcggtcattcaaatatggagactacgtacattatcaatattcaactagaacacaaaaggaacgacttgaaagttatgctgaaat |
6937601 |
T |
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| Q |
219 |
ttgatccatcattatgtgatgaaagacaata |
249 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
6937600 |
ttaatccatcattatgtgatgaaagacaata |
6937570 |
T |
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