View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19025_high_4 (Length: 545)
Name: NF19025_high_4
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 545
Target Start/End: Complemental strand, 23879290 - 23878772
Alignment:
| Q |
20 |
atagcaactgcaaatgagtaaatataataatacggctacttgtatgtatatagatccatcactaagtataagtacttacccgttgctgtgaacatctgct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23879290 |
atagcaactgcaaatgagtaaatataataacagggcaacttgtat----atagatccatcactaagtatcagtacttacccgttgctgtgaacatctgct |
23879195 |
T |
|
| Q |
120 |
gaatcctgcaaaggcgttacctttgaagaacttaatgacaagtcaacatgaacgggacccctgacggtattgctaacttcaagaactacacatttgacaa |
219 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23879194 |
gaatcctgcaaaggcattacatttgaagaacgtaatgacaagtcaacatgaatggtacccctgacagtattgctaacttcaagaactacacatttgacaa |
23879095 |
T |
|
| Q |
220 |
actgcccatcatgatatcccgacaacggatcaggcacccatttgtctgtaagttcagtaaaatgtacttttccatatatatgaggaccaatttgtacaag |
319 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23879094 |
actgcccatcatgatatccagacaacggatcaggcacccatttgtcagtaagttcagtaaaatgtacttttccatatatatgaggaccaatttgtacaag |
23878995 |
T |
|
| Q |
320 |
caatccaccaacaccaggaagtattttactaatccttcctcctaaaatatctccttcatgaatatatgctgtcaaatctttattcacggcattaatttgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
23878994 |
caatccaccaacaccaggaagtattttactaatccttcctcctaaactatctccttcatgaatatacgctgtcaaatctttattcacagcattaatttgt |
23878895 |
T |
|
| Q |
420 |
ggctcctcattaggtctgaaaggaagagtagaaaaggggcgcaaaaccaaccgcaggagcttcttctccaagtcgttgatactcaaaacatgaccagaaa |
519 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23878894 |
ggctcctcattaggtctgaaagggagagtagaaaaggggcgcaaaaccaaccgcaagagcttcttctccaa---gttgatactcagaacatgaccagaaa |
23878798 |
T |
|
| Q |
520 |
caggttttccaacatgatatcgattt |
545 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23878797 |
caggttttccaacatgatatcgattt |
23878772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University