View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_high_41 (Length: 229)
Name: NF19025_high_41
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 35520090 - 35520298
Alignment:
| Q |
5 |
gtaacttccacaccaacgacgttcacttgtcaacagatggctcttagtttccctcaaggtactacttctattaaacgcacaaacgaagaatttcgaaagc |
104 |
Q |
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| T |
35520090 |
gtaacttccacatcaatgatgttcacttgccaacagattgctcttagtttccctcaaggtactacttctattaaatgtacaaaccaagaatttcaaaagc |
35520189 |
T |
|
| Q |
105 |
aacaatctaatattcaatcaaattttggcaacaataacaaaagcattgatcttagaggtcaaagcatattttctaataatgactcagaaccattggaatg |
204 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
35520190 |
aacaatctaatattcaatcaaattttggcaacaatgacacaagcattgatcttagaggtcaaagcatattttctaataatgagtcagaaccattggattg |
35520289 |
T |
|
| Q |
205 |
gtttggtga |
213 |
Q |
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||||||||| |
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| T |
35520290 |
gtttggtga |
35520298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 35536188 - 35536396
Alignment:
| Q |
5 |
gtaacttccacaccaacgacgttcacttgtcaacagatggctcttagtttccctcaaggtactacttctattaaacgcacaaacgaagaatttcgaaagc |
104 |
Q |
| |
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|||||||||||| ||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||| |
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| T |
35536188 |
gtaacttccacatcaatgatgttcacttgccaacagattgctcttagtttccctcaaggtactacttctattaaatgtacaaaccaagaatttcaaaagc |
35536287 |
T |
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| Q |
105 |
aacaatctaatattcaatcaaattttggcaacaataacaaaagcattgatcttagaggtcaaagcatattttctaataatgactcagaaccattggaatg |
204 |
Q |
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||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| || |||||||||||||| || |
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| T |
35536288 |
aacaatctaatattcaatcaaattttggcaacaatgacacaatcattgatcttagaggtcaaagcatattttctaataacgagtcagaaccattggattg |
35536387 |
T |
|
| Q |
205 |
gtttggtga |
213 |
Q |
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||||||||| |
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| T |
35536388 |
gtttggtga |
35536396 |
T |
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