View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_high_5 (Length: 534)
Name: NF19025_high_5
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Original strand, 35829218 - 35829728
Alignment:
| Q |
11 |
caaaggagaatgaaaaagacacaatcgaaagaggtactcacatttaatttccggtacactttggatatgattactccggcgcgaatggaacttgtggggn |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
35829218 |
caaaggagaatgaaaaagacacaatcgaaagaggtactgacatttaatttccggtacattttggatatgattactccggcgcgaatggaacttatgggaa |
35829317 |
T |
|
| Q |
111 |
nnnnnnnn-ttattttacttgtactttgtttctatgaccaatatacacatgatgaaaaatttgttaccataacaaggtgcatcaaacacacctcaaggac |
209 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35829318 |
aaataataattattttacttgtactttgtatctatgaccaatatacacatgatgaaaaatttgttaccattacaaggtgcatcaaacacacctcaaggac |
35829417 |
T |
|
| Q |
210 |
acctccatcagactatcaggtttgcctataaaaggtggtgacctcttcaaattgtcttctcaacttttcatttgcatcaaacatttccttatagcagaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829418 |
acctccatcagactatcaggtttgcctataaaaggtggtgacctcttcaaattgtcttctcaacttttcatttgcatcaaacatttccttatagcagaac |
35829517 |
T |
|
| Q |
310 |
agtattcaaccccctctcttattaagcaatttttataagaag--nnnnnnntcatggttttaaaacttgttagtttctcaaaacatgtcatattttcatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829518 |
agtattcaaccccctctcttattaagcaatttttataagaagaaaaaaaaatcatggttttaaaacttgttagtttctcaaaacatgtcatattttcatt |
35829617 |
T |
|
| Q |
408 |
taccaaaaccattataattctaatccttagttttatactttacaaagctgactcaggctgcaacaattctattacaacttcattagttcaaattccaccc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35829618 |
taccaaaaccattataattctaatccttagttttatactttacaaagctgactcaggctgcaacaattctattacaacttcattagttcaaatttcaccc |
35829717 |
T |
|
| Q |
508 |
tatgatgttat |
518 |
Q |
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||||||||||| |
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| T |
35829718 |
tatgatgttat |
35829728 |
T |
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