View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_high_8 (Length: 469)
Name: NF19025_high_8
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Original strand, 1481230 - 1481669
Alignment:
| Q |
12 |
tattctcaatgtgatgccgagtttcgaagttattaataaaattctaatttatgaactaataaattctatattactttgatataagtttgattgagtgaac |
111 |
Q |
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| T |
1481230 |
tattctcaatgcgatgccgagtttcgaagatattaataaaattctaatttatgaactaataaattctatattactttgatataagtttgattgagtgaac |
1481329 |
T |
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| Q |
112 |
ttatcctatattattttaatttaaaagtatctttagaaatgttaaacatgtattagcnnnnnnngaaaagaaatggtaatcatgtaacaatatcatctat |
211 |
Q |
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| T |
1481330 |
ttatcctatattattttaatttaaaagtatctttagaaatgttaaacatgtattagcaaaaaaagaaaagaaatggtaatcatgtaacaatatcatctat |
1481429 |
T |
|
| Q |
212 |
tctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacctgcg |
311 |
Q |
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| T |
1481430 |
tctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcg |
1481529 |
T |
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| Q |
312 |
tcgcacgggtcaaatcttagtaattgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttag |
411 |
Q |
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| T |
1481530 |
tcgcacgggtcaaatcttagtaattgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttag |
1481629 |
T |
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| Q |
412 |
ttgctatgtcacttgcactcactgaaacaagtatagtgag |
451 |
Q |
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| T |
1481630 |
ttgctatgtcacttgcactcactgaaacaagtatagtgag |
1481669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 344 - 451
Target Start/End: Original strand, 49190892 - 49190999
Alignment:
| Q |
344 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagt |
443 |
Q |
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| T |
49190892 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagt |
49190991 |
T |
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| Q |
444 |
atagtgag |
451 |
Q |
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| T |
49190992 |
atagtgag |
49190999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 7314516 - 7314550
Alignment:
| Q |
79 |
atattactttgatataagtttgattgagtgaactt |
113 |
Q |
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| T |
7314516 |
atattacttttatataagtttgattgagtgaactt |
7314550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 1850638 - 1850550
Alignment:
| Q |
209 |
tattctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgatttt |
297 |
Q |
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| T |
1850638 |
tattcttttttattttaaatgttgttgaatgcatattaagataattttaataataatattgtatacttattaagtttgtttgtgatttt |
1850550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 30475886 - 30475857
Alignment:
| Q |
357 |
gtttcaaatgaattaggagctggtaatcca |
386 |
Q |
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| T |
30475886 |
gtttcaaatgaattaggagctggtaatcca |
30475857 |
T |
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