View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_1 (Length: 708)
Name: NF19025_low_1
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 21 - 528
Target Start/End: Complemental strand, 42935901 - 42935391
Alignment:
| Q |
21 |
gtggctggaatttcaatgaagatggattggaacttgtgcctgtattcccaaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaaga |
120 |
Q |
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| T |
42935901 |
gtggctggaatttcaatgaagatggattggaacttgtgcctgtattcccaaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaaga |
42935802 |
T |
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| Q |
121 |
agaaaaagtgatccaagaggatgatgttgttacagcatcaggaactgtgatggagccaaagaccaatactactgatgt---tgatcatgaaaatgttggt |
217 |
Q |
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| T |
42935801 |
agaaaaagtgatccaagaggatgctgttgttacagcatcaggaactgtgatggagccaaagaccaatacttctgatgtggttgatcatgaaaatgtcggt |
42935702 |
T |
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| Q |
218 |
ggtgttgttaagaaccgcgaagctacgttggcaacgttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaa |
317 |
Q |
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| T |
42935701 |
ggtgttgttaagaaccgtgaagctacgttggcaacgttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaa |
42935602 |
T |
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| Q |
318 |
ttggtggagaggagattcatgtggctgaaagtgatgagaaaatggtgcaagagatctctaagttgaggacagaattggaaaatgagaagaagaagaactt |
417 |
Q |
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| T |
42935601 |
ttggtggagaggagattcatgtggctgaaagtgatgagaaaatggtgcaagagatctctaagttgaggacagaattggaaaatgagaagaagaagaactt |
42935502 |
T |
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| Q |
418 |
gcagctggagatgcagctggagaatatcaagcttcacctaatttcctctgctgctaatagtcctactagttagttaacttgataatatgtgtttctacat |
517 |
Q |
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| T |
42935501 |
gcagctggagatgcagctggagaatatcaagcttcacctaatttcctctgctgctaatagtcctactagttaattaacttgataatatgtgtttctacat |
42935402 |
T |
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| Q |
518 |
aatatctctga |
528 |
Q |
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| T |
42935401 |
aatatctctga |
42935391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 570 - 690
Target Start/End: Complemental strand, 42935391 - 42935271
Alignment:
| Q |
570 |
atatgttgtatttcttaaagttagatactctactggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
669 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935391 |
atatgttgtatttcttaaatttagatactctaccggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
42935292 |
T |
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| Q |
670 |
gcgcagttcaacggattataa |
690 |
Q |
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| T |
42935291 |
gcacagtgcaacggattataa |
42935271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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