View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_10 (Length: 456)
Name: NF19025_low_10
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 29464441 - 29463994
Alignment:
| Q |
1 |
catgatagattatgcaacactcaaccatttatgatatgtgatgattaggtgaaaaggtcaaattccattatagtgcaaatgagaagacaaaaaccatggt |
100 |
Q |
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| T |
29464441 |
catgatagattatgcaacactcaaccatttatgatatgtgatgattaggtgaaaaggtcaaattccattatagtgcaaatgagaagacaaaaaccatggt |
29464342 |
T |
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| Q |
101 |
ccccagcatgggccatggggctttaaagtgtgttttggcaatcaatattcatggaatttgataattggtgaaaaggaaaaacaccaatgcatggctataa |
200 |
Q |
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| T |
29464341 |
ccccagcatgggccatggggctttaaagtgtgttttggcaatcaatattcatggaatttgataattggtgaaaaggaaaaacaccaatgcatggctataa |
29464242 |
T |
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| Q |
201 |
cttataaaccgtagtttgggtaacatgactagagtctctggttttttcgaacgatttgctatttgatgaacctcattaacattggaattcaatcacttgt |
300 |
Q |
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| T |
29464241 |
cttataaaccgtagtttgggtaacatgactaaagtttctcgtttttccgaacgatttgccatttgatgaaccttattaacacttgaattcaatcacttgt |
29464142 |
T |
|
| Q |
301 |
ttagtcaaactttacttgccttaaaatctaaactaagatccatttctttttaaaagctaagaattgagataaaagaactcttatgaaggtaatgaaatgt |
400 |
Q |
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||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29464141 |
ttaatcaaactttacttgccttcaaatctaaactaaggtccatttctttttaaaaactaagaattgagataaaagaactcttatgaaggtaatgaaatgt |
29464042 |
T |
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| Q |
401 |
atatgtttatcaaactcttttgcaataaatttttggatatatattctt |
448 |
Q |
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| T |
29464041 |
atatgtttatcaaactcttttgcaataattttttggatatatattctt |
29463994 |
T |
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