View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19025_low_12 (Length: 441)

Name: NF19025_low_12
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19025_low_12
NF19025_low_12
[»] chr5 (11 HSPs)
chr5 (138-427)||(27433804-27434103)
chr5 (146-269)||(27432955-27433078)
chr5 (182-271)||(13549385-13549474)
chr5 (142-254)||(27433226-27433336)
chr5 (295-413)||(27433301-27433421)
chr5 (227-272)||(20400194-20400239)
chr5 (227-272)||(34997868-34997913)
chr5 (320-401)||(13549840-13549923)
chr5 (227-272)||(17843205-17843250)
chr5 (227-272)||(20401056-20401101)
chr5 (227-272)||(34996568-34996613)
[»] chr6 (7 HSPs)
chr6 (182-424)||(30695937-30696188)
chr6 (142-427)||(5323851-5324147)
chr6 (142-243)||(5323007-5323108)
chr6 (182-401)||(30696182-30696410)
chr6 (142-265)||(5323777-5323900)
chr6 (309-401)||(30693351-30693445)
chr6 (194-272)||(18754297-18754375)
[»] chr3 (18 HSPs)
chr3 (142-246)||(54765800-54765904)
chr3 (146-292)||(54763514-54763660)
chr3 (146-405)||(54764470-54764739)
chr3 (183-282)||(54765211-54765311)
chr3 (343-416)||(54763872-54763945)
chr3 (142-265)||(1317654-1317776)
chr3 (142-217)||(54763835-54763910)
chr3 (230-269)||(1317463-1317502)
chr3 (146-217)||(54764052-54764123)
chr3 (227-272)||(4358555-4358600)
chr3 (227-272)||(26059565-26059610)
chr3 (191-249)||(49827645-49827703)
chr3 (227-272)||(21632822-21632867)
chr3 (227-272)||(26059992-26060037)
chr3 (227-272)||(26060864-26060909)
chr3 (356-405)||(54765081-54765130)
chr3 (51-115)||(22440386-22440450)
chr3 (312-405)||(49827711-49827806)
[»] chr2 (6 HSPs)
chr2 (144-246)||(1078149-1078251)
chr2 (146-416)||(1076822-1077101)
chr2 (146-282)||(1076474-1076610)
chr2 (146-405)||(1077448-1077718)
chr2 (142-217)||(1076785-1076860)
chr2 (365-427)||(1078204-1078266)
[»] chr4 (15 HSPs)
chr4 (142-272)||(54960912-54961041)
chr4 (190-277)||(54961313-54961400)
chr4 (146-265)||(54962263-54962382)
chr4 (227-292)||(577320-577385)
chr4 (303-416)||(54961003-54961118)
chr4 (179-254)||(54962716-54962791)
chr4 (227-272)||(18122451-18122496)
chr4 (383-423)||(54962341-54962381)
chr4 (383-426)||(54961244-54961287)
chr4 (227-272)||(36031888-36031933)
chr4 (227-272)||(36032315-36032360)
chr4 (233-282)||(36032755-36032804)
chr4 (227-272)||(37086035-37086080)
chr4 (227-272)||(37087327-37087372)
chr4 (228-272)||(36033187-36033231)
[»] scaffold0206 (4 HSPs)
scaffold0206 (142-267)||(10821-10946)
scaffold0206 (146-265)||(11243-11363)
scaffold0206 (146-217)||(10581-10652)
scaffold0206 (383-413)||(10582-10612)
[»] chr1 (11 HSPs)
chr1 (144-263)||(20201239-20201357)
chr1 (295-427)||(20201311-20201445)
chr1 (227-272)||(7715686-7715731)
chr1 (227-292)||(7716113-7716178)
chr1 (227-272)||(37398820-37398865)
chr1 (363-423)||(20201538-20201598)
chr1 (227-274)||(41778135-41778182)
chr1 (227-272)||(4291418-4291463)
chr1 (227-272)||(4292290-4292335)
chr1 (227-272)||(33208945-33208990)
chr1 (227-272)||(37398392-37398437)
[»] scaffold0517 (2 HSPs)
scaffold0517 (227-272)||(9211-9256)
scaffold0517 (227-272)||(9649-9694)
[»] chr7 (2 HSPs)
chr7 (227-272)||(46364756-46364801)
chr7 (227-272)||(46365629-46365674)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 138 - 427
Target Start/End: Complemental strand, 27434103 - 27433804
Alignment:
Q  138 atcacgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccg 237  Q
    |||| ||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||  ||| |||||| ||||    
T  27434103 atcatgtgcatttgagttacttatgaaattttactcaatgcccacttctcccatgcattttatttatttacaatattttagacaatgtacattta-cccg 27434005  T
Q  238 tgcattttagttgatgaaggttcaatataattatatagttaaagtaatgtgatatgc-------tataaatgtttttgcaagaacaatttttt--ataaa 328  Q
    |||||||||||||||||  ||| |||||||||||| | ||||||| ||||||||| |       |||||| ||||| |||| |||||||||||  |||||    
T  27434004 tgcattttagttgatgagagtttaatataattatagaattaaagtgatgtgatattctaaatattataaacgttttcgcaataacaatttttttgataaa 27433905  T
Q  329 gaacaacttgt--ctcgtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaatttttgtcaatgcccccttctccca 426  Q
     ||||| ||||  ||  ||||||| || ||||||  |||||||||||||||| |  |||||||||||||||||||||||||||||| ||| ||||| |||    
T  27433904 taacaatttgtcccttatatcaaagttagtttagttagtgacaacttatcccgtccatttgagttacttttgaaatttttgtcaattcccacttcttcca 27433805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 27433078 - 27432955
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcatttt 245  Q
    ||||||||||| || |||||||||| | ||| ||| |||||||||| |||||||| ||||||||| |||||||||  |||||| ||||||||||||||||    
T  27433078 catttgagttaattttgaaattttaattaatgctcacttctcccatacattttatatatttacgaaattttagacaatgtccacttatcccgtgcatttt 27432979  T
Q  246 agttgatgaaggttcaatataatt 269  Q
    ||||||||  ||||||||||||||    
T  27432978 agttgatgggggttcaatataatt 27432955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 13549474 - 13549385
Alignment:
Q  182 cttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcattttagttgatgaaggttcaatataattat 271  Q
    |||||| |||||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  13549474 cttctctcatgcattttatttatttacgatattatagacaatgtccatttatcccatgcattttagttgattagggttcaatataattat 13549385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 27433336 - 27433226
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgca 241  Q
    ||||||||||||||||||||||||| ||| |||||  | |||| ||   |||||||||||||||||| |||||||||||  | | |||||||| ||||||    
T  27433336 cgtgcatttgagttacttctgaaatcttagtcaatgtttgcttatctt-tgcattttatttatttacaatattttagacaat-ttcatttatctcgtgca 27433239  T
Q  242 ttttagttgatga 254  Q
    |||||||||||||    
T  27433238 ttttagttgatga 27433226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 413
Target Start/End: Complemental strand, 27433421 - 27433301
Alignment:
Q  295 tataaatgtttttgcaagaacaattttttataaagaacaacttgtctc--gtatcaaaatttgtttagccagtgacaacttatcccatttatttgagtta 392  Q
    ||||||| |||| ||||||||||||||||||||| ||||| ||||| |  |||||||| ||  |||||  ||||| |||||||||| |  ||||||||||    
T  27433421 tataaattttttagcaagaacaattttttataaataacaatttgtcccatgtatcaaagttaatttagttagtgataacttatcccgtgcatttgagtta 27433322  T
Q  393 cttttgaaatttttgtcaatg 413  Q
    ||| |||||| || |||||||    
T  27433321 cttctgaaatcttagtcaatg 27433301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 20400194 - 20400239
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  20400194 catttatcccgtgcattttagtttatgagggttcaatatcattata 20400239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 34997913 - 34997868
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  34997913 catttatcccgtgcattttagtttatgagggttcaatatcattata 34997868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 13549923 - 13549840
Alignment:
Q  320 ttttataaagaacaacttgtct--cgtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaa 401  Q
    |||||||||  |||||||||||  ||||||||| || |||||||| |||||||||| |||| ||||||||| ||| || |||||    
T  13549923 ttttataaatgacaacttgtctcgcgtatcaaagttagtttagccggtgacaacttctcccgtttatttgatttaattctgaaa 13549840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 17843250 - 17843205
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||| ||||||||| |||| |||||||||| ||||||    
T  17843250 catttatcccgtgtattttagtttatgagggttcaatatcattata 17843205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 20401056 - 20401101
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  20401056 catttatcccgtgcatattagtttatgagggttcaatatcattata 20401101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 34996613 - 34996568
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  34996613 catttatcccgtgcatattagtttatgagggttcaatatcattata 34996568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 182 - 424
Target Start/End: Original strand, 30695937 - 30696188
Alignment:
Q  182 cttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcattttagttgatgaaggttcaatataattatatagttaaag 281  Q
    |||||| |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||    
T  30695937 cttctctcatgcattttatttatttacgatattatagacaatgtccatttatcccgtgcattttggttgattagggttcaatataattatagagttaaag 30696036  T
Q  282 taatgtgat-------atgctataaatgtttttgcaagaacaat-tttttataaagaacaacttgt--ctcgtatcaaaatttgtttagccagtgacaac 371  Q
    | |||||||       ||  |||||| ||||||||||||||||| ||||||| || ||||||||||  | ||||||||| ||  ||||| || |||||||    
T  30696037 tgatgtgattttctaaatagtataaacgtttttgcaagaacaatatttttattaataacaacttgtcccgcgtatcaaatttaatttagtcaatgacaac 30696136  T
Q  372 ttatcccatttatttgagttacttttgaaatttttgtcaatgcccccttctcc 424  Q
    ||||||| |  ||||| |||| ||||  |||||||| |||||||| |||||||    
T  30696137 ttatcccgtgcatttgtgtta-ttttttaatttttggcaatgcccacttctcc 30696188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 142 - 427
Target Start/End: Complemental strand, 5324147 - 5323851
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatt-tatttacgatattttagacgttgtccatttatcccgtgc 240  Q
    |||||||||| |||| ||  ||||||||||||||  | |  ||||||  |||||||| || ||||| | |||||||||||  ||| ||||||||||||||    
T  5324147 cgtgcatttgtgttaatttcgaaattttactcaacacccatttctcctgtgcatttttttctattttcaatattttagacaatgttcatttatcccgtgc 5324048  T
Q  241 attttagttgatgaaggttcaatataattatatagttaaagtaatgtgat-------atgctataaatgtttttgcaagaacaattt-tttataaagaac 332  Q
    ||||||||| ||||  |||||||||||||||| | ||||||| |||||||       ||  |||||| ||||| | ||||||||||| ||| |||| |||    
T  5324047 attttagttaatgagagttcaatataattatagaattaaagtgatgtgatgttctagatagtataaacgttttcgaaagaacaatttctttttaaataac 5323948  T
Q  333 aacttgtctc--gtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaatttttgtcaatgcccccttctcccat 427  Q
    | ||||||||  |||||||| || ||||||    |||||||||||  | |  |||||||||||||||||| ||||||||||||||| ||||||||||    
T  5323947 agcttgtctcgtgtatcaaagttagtttagttgatgacaacttatttcgtgcatttgagttacttttgaattttttgtcaatgcccacttctcccat 5323851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 5323108 - 5323007
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgca 241  Q
    ||||||||| ||||| || |||| ||||| ||||| | |||||||||||||||||||||||||||| |||||  || ||  ||| |||||||||||||||    
T  5323108 cgtgcatttaagttaattttgaacttttagtcaatgcccgcttctcccatgcattttatttatttatgatatagtaaacaatgttcatttatcccgtgca 5323009  T
Q  242 tt 243  Q
    ||    
T  5323008 tt 5323007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 401
Target Start/End: Original strand, 30696182 - 30696410
Alignment:
Q  182 cttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcattttagttgatgaaggttcaatataattatatagttaaag 281  Q
    ||||||| |||||||||| |||||||| | |||||||||  | | || ||||||||||||||||||||||||| |||||| | | ||| || | || |||    
T  30696182 cttctcctatgcattttagttatttacaaaattttagacaatatgcacttatcccgtgcattttagttgatgacggttcactgtcattgtagaattgaag 30696281  T
Q  282 taatgtgatatgcta-------taaatgtttttgcaagaacaattttttataaagaacaacttgtct--cgtatcaaaatttgtttagccagtgacaact 372  Q
      | |||||||  ||       ||||||||||  ||||| ||||||||||||||  | |||||||||   |||||||| || ||||||||| ||||||      
T  30696282 cgacgtgatattataaataatataaatgttttctcaagatcaattttttataaatgaaaacttgtctagtgtatcaaagttagtttagccaatgacaata 30696381  T
Q  373 tatcccatttatttgagttacttttgaaa 401  Q
    | | |||||||||||||||| || |||||    
T  30696382 tcttccatttatttgagttaattctgaaa 30696410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 5323900 - 5323777
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgca 241  Q
    |||||||||||||||||| |||| ||||  ||||| | | |||||||||||||||||| ||| |||| | |||||||||  |  |||  |||||||| ||    
T  5323900 cgtgcatttgagttacttttgaattttttgtcaatgcccacttctcccatgcattttagttagttacaaaattttagacaattcccacgtatcccgtcca 5323801  T
Q  242 ttttagttgatgaaggttcaatat 265  Q
    || ||||| |||| | ||||||||    
T  5323800 ttatagttaatgaggattcaatat 5323777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 30693351 - 30693445
Alignment:
Q  309 caagaacaattttttataaagaacaacttgt--ctcgtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaa 401  Q
    ||||||||||||||||||||  | || ||||  | ||||||||| || |||||||||||||||| || ||| |||||||||||||| || |||||    
T  30693351 caagaacaattttttataaatgagaatttgtcccgcgtatcaaagttagtttagccagtgacaatttctccaatttatttgagttaattctgaaa 30693445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 18754297 - 18754375
Alignment:
Q  194 attttatttatttacgatattttagacgttgtccatttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||  || | ||||| |  ||| ||||||||||||||||||||||| | |||| |||||||| ||||||    
T  18754297 attttatttatttctgaaagtttagtcaatgttcatttatcccgtgcattttagtttacgaagattcaatatcattata 18754375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 54765904 - 54765800
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgca 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||||||||||| ||||    
T  54765904 cgtgcatttgagttacttctgaaattttactcaatgctcgcttctcccatgcattttatttatttacgatattttagacaacatccatttatcccatgca 54765805  T
Q  242 tttta 246  Q
    |||||    
T  54765804 tttta 54765800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 292
Target Start/End: Complemental strand, 54763660 - 54763514
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcatttt 245  Q
    ||||||||||| |||||||||||||  || | | | |||||||| |||||||||| |||||||||  ||||||||  |||||| ||||| ||||||||||    
T  54763660 catttgagttaattctgaaattttaggcattgcccacttctcccctgcattttatatatttacgaatttttagacaatgtccacttatctcgtgcatttt 54763561  T
Q  246 agttgatgaaggttcaatataattatatagttaaagtaatgtgatat 292  Q
    ||||||||| |||||||||||||| || | ||||||| | |||||||    
T  54763560 agttgatgagggttcaatataattgtagaattaaagtgacgtgatat 54763514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 146 - 405
Target Start/End: Complemental strand, 54764739 - 54764470
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcc-cgtgcattt 244  Q
    ||||||||||| || |||||||| | ||||| | | |||||||||||||||| || ||||||||| |||||| ||   ||||||||| || |||| ||||    
T  54764739 catttgagttaattatgaaatttaagtcaatgccctcttctcccatgcatttgatatatttacgaaattttaaacaacgtccatttacccgcgtgtattt 54764640  T
Q  245 tagttgatgaaggttcaatataattatatagttaaagtaatgtgatatgc-------tataaatgtttttgcaagaacaattttttataaagaacaactt 337  Q
    |||||||||| |||||||||||||  || | ||||||| || | |||| |       |||||| ||||| | |||||| | |||||||||| ||||||||    
T  54764639 tagttgatgagggttcaatataatcgtagaattaaagttatctaatattctaaaaagtataaacgttttcgtaagaacgactttttataaataacaactt 54764540  T
Q  338 gtctc--gtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaatttt 405  Q
     || |  |||||||| ||  ||||| |||||||||||||| || |  |||||||||||||||||||||||    
T  54764539 ctcccgtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttt 54764470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 54765311 - 54765211
Alignment:
Q  183 ttctcccatgcattttatttatttacgatattttagacgttgtccatttatccc-gtgcattttagttgatgaaggttcaatataattatatagttaaag 281  Q
    |||||||||||||||||| ||||||||| |||||| ||   ||||||||||||| |||||||||||||||||| |||||||||||||| || | ||||||    
T  54765311 ttctcccatgcattttatatatttacgaaattttaaacaacgtccatttatccccgtgcattttagttgatgagggttcaatataattgtagaattaaag 54765212  T
Q  282 t 282  Q
    |    
T  54765211 t 54765211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 416
Target Start/End: Complemental strand, 54763945 - 54763872
Alignment:
Q  343 gtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaatttttgtcaatgccc 416  Q
    |||||||| ||  ||||| |||||||||||||| || |  ||||||||||||||||||||||||||||||||||    
T  54763945 gtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttttgtcaatgccc 54763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 1317776 - 1317654
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgca 241  Q
    ||||||||||||||| ||||||||||||| |||||   | ||||||||| ||||||||||||| || | | ||||||||  |  ||| ||||||| | ||    
T  1317776 cgtgcatttgagttagttctgaaattttattcaatgtccacttctcccaagcattttatttatgtatggtcttttagacaat-cccacttatcccattca 1317678  T
Q  242 ttttagttgatgaaggttcaatat 265  Q
    ||||||||||||| ||| ||||||    
T  1317677 ttttagttgatgatggtacaatat 1317654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 54763910 - 54763835
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatatttta 217  Q
    |||||||||||||||||| |||||||||  ||||| | || |||| || | |||||||||||||||||||||||||    
T  54763910 cgtgcatttgagttacttttgaaatttttgtcaatgcccgtttcttccgttcattttatttatttacgatatttta 54763835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 1317502 - 1317463
Alignment:
Q  230 ttatcccgtgcattttagttgatgaaggttcaatataatt 269  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  1317502 ttatcccatgcattttagttgatgaaggttcaatataatt 1317463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 54764123 - 54764052
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatatttta 217  Q
    ||||||||||| || |||||||||| ||||| | |  |||||||||||||||||| ||||||||| ||||||    
T  54764123 catttgagttaattatgaaattttagtcaatgcccttttctcccatgcattttatatatttacgaaatttta 54764052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 4358600 - 4358555
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  4358600 catttatcccgtgcattttagtttatgagggttcaatatcattata 4358555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 26059565 - 26059610
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  26059565 catttatcccgtgcattttagtttatgagggttcaatatcattata 26059610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 49827703 - 49827645
Alignment:
Q  191 tgcattttatttatttacgatattttagacgttgtccatttatcccgtgcattttagtt 249  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||  |||||||||||||    
T  49827703 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagtt 49827645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 21632867 - 21632822
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  21632867 catttatcccgtgcatattagtttatgagggttcaatatcattata 21632822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 26059992 - 26060037
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| || ||||||| ||||||    
T  26059992 catttatcccgtgcattttagtttatgaggggtcaatatcattata 26060037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 26060864 - 26060909
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  26060864 catttatcccgtgcatattagtttatgagggttcaatatcattata 26060909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 54765130 - 54765081
Alignment:
Q  356 tttagccagtgacaacttatcccatttatttgagttacttttgaaatttt 405  Q
    ||||| |||||||||||||| || |  |||||||||||||||||||||||    
T  54765130 tttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttt 54765081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 22440450 - 22440386
Alignment:
Q  51 ttcctctagagatttggtcgttacttttacttatcttggctgctgtaactccttttctttgtatt 115  Q
    ||||||| |||||||| | |||  ||||||||||||||| |||||  || |||||||||||||||    
T  22440450 ttcctcttgagatttgtttgttgtttttacttatcttgggtgctgctaccccttttctttgtatt 22440386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 49827806 - 49827711
Alignment:
Q  312 gaacaattttttataaagaacaacttgtctc--gtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaatttt 405  Q
    ||||||||||||||||| |||||||||| ||  |||| ||| ||  ||||| || ||| |||||||||| |  |||| |||||||| |||||||||    
T  49827806 gaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttacttctgaaatttt 49827711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 1078251 - 1078149
Alignment:
Q  144 tgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcatt 243  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||    |||||||||||| ||||||    
T  1078251 tgcatttgagttacttctgaaattttactcaatgcccgcttctcccatgcattttatttatttacgatattttaaacaacatccatttatcccatgcatt 1078152  T
Q  244 tta 246  Q
    |||    
T  1078151 tta 1078149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 146 - 416
Target Start/End: Complemental strand, 1077101 - 1076822
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatccc-gtgcattt 244  Q
    ||||||||||| || |||||||||| ||||| | |   |||||||||||||| || ||||||||| |||||| ||   ||| ||||||||| ||| ||||    
T  1077101 catttgagttaattatgaaattttagtcaatgcccttctctcccatgcattt-atatatttacgaaattttatacaacgtctatttatccccgtgtattt 1077003  T
Q  245 tagttgatgaaggttcaatataattatatagttaaagtaatgtgatatgc-------tataaatgtttttgcaagaacaattttttataaagaacaactt 337  Q
    |||||||||| |||||||||||||| |||| ||||||| || |||||| |       |||||| ||||| | || ||||| |||||  ||| ||||||||    
T  1077002 tagttgatgagggttcaatataattgtataattaaagttatatgatattctaaaaagtataaacgttttcgtaataacaacttttttaaaataacaactt 1076903  T
Q  338 gtc--tcgtatcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttgaaatttttgtcaatgccc 416  Q
     ||    |||||||| ||  ||||| |||||||||||||| || |  ||||||||||||||||||||||||||||||||||    
T  1076902 ctcgtgtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttttgtcaatgccc 1076822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 146 - 282
Target Start/End: Complemental strand, 1076610 - 1076474
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcatttt 245  Q
    ||||||||||| |||| ||||||||  || | | | |||||||| |||||||||| |||||||||  ||||||||   ||||||||||| ||||||||||    
T  1076610 catttgagttaattctaaaattttaggcattgcccacttctcccctgcattttatatatttacgaatttttagacaacgtccatttatctcgtgcatttt 1076511  T
Q  246 agttgatgaaggttcaatataattatatagttaaagt 282  Q
    ||||||||| |||||||||||||| || | |||||||    
T  1076510 agttgatgagggttcaatataattgtagaattaaagt 1076474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 405
Target Start/End: Complemental strand, 1077718 - 1077448
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcc-cgtgcattt 244  Q
    ||||||||||| || |||||||| | ||||| | |  ||||||||||||||| || |||||| || |||||| ||   |||||||||||| |||| ||||    
T  1077718 catttgagttaattatgaaatttaagtcaatgcccttttctcccatgcatttgatatatttatgaaattttaaacaacgtccatttatccgcgtgtattt 1077619  T
Q  245 tagttgatgaaggttcaatataattatatagttaaagtaatgtgatatgc-------tataaatgtttttgcaagaacaattttttataaagaacaactt 337  Q
    |||||||||| |||||||||||||  || | ||||||| || |||||| |       |||||| ||||| | |||||| | |||||||||| ||||||||    
T  1077618 tagttgatgagggttcaatataatcgtagaattaaagttatctgatattcaaaaaagtataaacgttttcgtaagaacgaatttttataaataacaactt 1077519  T
Q  338 gtctc--gtatcaaaa-tttgtttagccagtgacaacttatcccatttatttgagttacttttgaaatttt 405  Q
     || |  ||||||||| ||  ||||| |||||||||||||| || |  ||||||||||||||| |||||||    
T  1077518 ctcccatgtatcaaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttaaaatttt 1077448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 1076860 - 1076785
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatatttta 217  Q
    |||||||||||||||||| |||||||||  ||||| | || |||| || | |||||||||||||||||||||||||    
T  1076860 cgtgcatttgagttacttttgaaatttttgtcaatgcccgtttcttccgttcattttatttatttacgatatttta 1076785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 1078266 - 1078204
Alignment:
Q  365 tgacaacttatcccatttatttgagttacttttgaaatttttgtcaatgcccccttctcccat 427  Q
    |||||| |||||||||  ||||||||||||| |||||||||  ||||||||| ||||||||||    
T  1078266 tgacaatttatcccatgcatttgagttacttctgaaattttactcaatgcccgcttctcccat 1078204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 272
Target Start/End: Complemental strand, 54961041 - 54960912
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgca 241  Q
    ||||||||||||||||||||||||||||| ||||| | || || |||| |||||||||||||||||||||||| |||||  | | || ||||   |||||    
T  54961041 cgtgcatttgagttacttctgaaattttagtcaatgcccgtttttcccgtgcattttatttatttacgatattatagacaatct-cacttatattgtgca 54960943  T
Q  242 ttttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||  ||||||||| ||||||    
T  54960942 ttttagttgatgacagttcaatatcattata 54960912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 54961400 - 54961313
Alignment:
Q  190 atgcattttatttatttacgatattttagacgttgtccatttatcccgtgcattttagttgatgaaggttcaatataattatatagtt 277  Q
    |||||||||||||||||||||| || |||||  |||||||||||||| ||||||||||||||||||| |||| |||||| ||| ||||    
T  54961400 atgcattttatttatttacgatgttatagacaatgtccatttatcccatgcattttagttgatgaagtttcattataatcatagagtt 54961313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 54962382 - 54962263
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcatttt 245  Q
    |||||||||||||| |||||||||  | ||| | | |||||| ||||||||||| |||||||| | ||| |||||  |||||||||||  ||| ||||||    
T  54962382 catttgagttacttttgaaatttttgttaatgcccacttctctcatgcattttagttatttacaaaattgtagacaatgtccatttatatcgttcatttt 54962283  T
Q  246 agttgatgaaggttcaatat 265  Q
    ||||||||| ||||||||||    
T  54962282 agttgatgacggttcaatat 54962263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 577385 - 577320
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattatatagttaaagtaatgtgatat 292  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  577385 catttacctcgtgcattttagttgatgagggttcaatataattatagagttaaagtgatgtgatat 577320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 416
Target Start/End: Complemental strand, 54961118 - 54961003
Alignment:
Q  303 tttttgcaagaacaatttttt-ataaagaacaacttgtctcgt--atcaaaatttgtttagccagtgacaacttatcccatttatttgagttacttttga 399  Q
    ||||||||||||||||||||| ||||| || |||||||| | |  |||||| || |||| | ||||||||||||||| | |  ||||||||||||| |||    
T  54961118 tttttgcaagaacaatttttttataaataaaaacttgtcacatgcatcaaagttagttt-gtcagtgacaacttatctcgtgcatttgagttacttctga 54961020  T
Q  400 aatttttgtcaatgccc 416  Q
    |||||| ||||||||||    
T  54961019 aattttagtcaatgccc 54961003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 54962791 - 54962716
Alignment:
Q  179 tcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcattttagttgatga 254  Q
    ||||||||||| | |||||| |||||||||||||||||||||    | |||||||||| | |||||||||||||||    
T  54962791 tcgcttctcccgtacattttctttatttacgatattttagacaacatacatttatcccatacattttagttgatga 54962716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 18122496 - 18122451
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  18122496 catttatcccgtgcattttagtttatgagggttcaatatcattata 18122451  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 54962381 - 54962341
Alignment:
Q  383 atttgagttacttttgaaatttttgtcaatgcccccttctc 423  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  54962381 atttgagttacttttgaaatttttgttaatgcccacttctc 54962341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 54961287 - 54961244
Alignment:
Q  383 atttgagttacttttgaaatttttgtcaatgcccccttctccca 426  Q
    |||||||||||||||||| | ||||||||||||| |||||||||    
T  54961287 atttgagttacttttgaattatttgtcaatgcccacttctccca 54961244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 36031888 - 36031933
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||| ||||||||| |||| |||||||||| ||||||    
T  36031888 catttatcccgtggattttagtttatgagggttcaatatcattata 36031933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 36032315 - 36032360
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| || ||||||| ||||||    
T  36032315 catttatcccgtgcattttagtttatgaggggtcaatatcattata 36032360  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 36032755 - 36032804
Alignment:
Q  233 tcccgtgcattttagttgatgaaggttcaatataattatatagttaaagt 282  Q
    ||||||||||||||||| |||| |||||||||| |||||| | |||||||    
T  36032755 tcccgtgcattttagtttatgagggttcaatatcattatagaattaaagt 36032804  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 37086080 - 37086035
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  37086080 catttatcccgtgcatattagtttatgagggttcaatatcattata 37086035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 37087372 - 37087327
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| || | |||||||||| ||||||    
T  37087372 catttatcccgtgcattttagtttataagggttcaatatcattata 37087327  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 36033187 - 36033231
Alignment:
Q  228 atttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||| |||||| |||| |||||||||| ||||||    
T  36033187 atttatcccgtgcatattagtttatgagggttcaatatcattata 36033231  T

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Target: scaffold0206 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 10821 - 10946
Alignment:
Q  142 cgtgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgca 241  Q
    ||||||||||||| |||| ||| |||||| | ||| |||||||||| ||||||||||||||||| | |||||| || ||  ||||||||||||  |||||    
T  10821 cgtgcatttgagtaacttatgatattttagtaaatgctcgcttctctcatgcattttatttattcatgatattgtaaacaatgtccatttatcatgtgca 10920  T
Q  242 ttttagttgatgaaggttcaatataa 267  Q
    ||||| |||| || ||||||||||||    
T  10921 ttttaattgacgagggttcaatataa 10946  T

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Target: scaffold0206; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 11243 - 11363
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttat-cccgtgcattt 244  Q
    ||||||||||| || |||||||| | ||||| | |  |||||||||||||||||| |||||| || |||||| || |||||||||||| ||| | |||||    
T  11243 catttgagttaattatgaaatttgagtcaatgcccttttctcccatgcattttatatatttatgaaattttaaacattgtccatttatccccttacattt 11342  T
Q  245 tagttgatgaaggttcaatat 265  Q
    ||||||||||| ||| |||||    
T  11343 tagttgatgaatgtttaatat 11363  T

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Target: scaffold0206; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 10581 - 10652
Alignment:
Q  146 catttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatatttta 217  Q
    |||||||||||||| |||||||||  |||||  |||||||| | ||||||||||||||||||||||||||||    
T  10581 catttgagttacttttgaaatttttgtcaatgttcgcttcttctatgcattttatttatttacgatatttta 10652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 10582 - 10612
Alignment:
Q  383 atttgagttacttttgaaatttttgtcaatg 413  Q
    |||||||||||||||||||||||||||||||    
T  10582 atttgagttacttttgaaatttttgtcaatg 10612  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 20201357 - 20201239
Alignment:
Q  144 tgcatttgagttacttctgaaattttactcaatcctcgcttctcccatgcattttatttatttacgatattttagacgttgtccatttatcccgtgcatt 243  Q
    |||||||||||||||| |||| |||| ||||||   |  ||||||||||||||||| |||||||| | |||||||||  ||||||||||| |||||||||    
T  20201357 tgcatttgagttacttttgaattttt-ctcaatgtccatttctcccatgcattttagttatttacaaaattttagacaatgtccatttattccgtgcatt 20201259  T
Q  244 ttagttgatgaaggttcaat 263  Q
    |||||||||||  |||||||    
T  20201258 ttagttgatgagagttcaat 20201239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 427
Target Start/End: Complemental strand, 20201445 - 20201311
Alignment:
Q  295 tataaatgtttttgcaagaacaatttttt-ataaagaacaacttgtctcgt--atcaaaatttgtttagccagtgacaacttatcccatttatttgagtt 391  Q
    |||||| | ||||||||||||| |||||| |||||  ||||||||||||||  |||||| || ||  || || ||||||||||||||||  |||||||||    
T  20201445 tataaacggttttgcaagaacattttttttataaatgacaacttgtctcgtgtatcaaacttagtccagtcaatgacaacttatcccatgcatttgagtt 20201346  T
Q  392 acttttgaaatttttgtcaatgcccccttctcccat 427  Q
    ||||||| ||||||| |||||| ||  |||||||||    
T  20201345 acttttg-aatttttctcaatgtccatttctcccat 20201311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 7715686 - 7715731
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  7715686 catttatcccgtgcattttagtttatgagggttcaatatcattata 7715731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 7716113 - 7716178
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattatatagttaaagtaatgtgatat 292  Q
    |||||||||||||||| |||||| |||| |||||||||| |||||| | || |||| |||||||||    
T  7716113 catttatcccgtgcatattagtttatgagggttcaatatcattatagatttgaagtgatgtgatat 7716178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 37398865 - 37398820
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  37398865 catttatcccgtgcattttagtttatgagggttcaatatcattata 37398820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 20201598 - 20201538
Alignment:
Q  363 agtgacaacttatcccatttatttgagttacttttgaaatttttgtcaatgcccccttctc 423  Q
    |||||||||||||||||||  ||||||||| |||||||||||| || || |||| ||||||    
T  20201598 agtgacaacttatcccattagtttgagttaattttgaaattttagtaaacgcccgcttctc 20201538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 41778182 - 41778135
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattatata 274  Q
    ||||||||||||||||||||||| |||| || ||||||| ||||||||    
T  41778182 catttatcccgtgcattttagtttatgaggggtcaatatcattatata 41778135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 4291418 - 4291463
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| || ||||||| ||||||    
T  4291418 catttatcccgtgcattttagtttatgaggggtcaatatcattata 4291463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 4292290 - 4292335
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  4292290 catttatcccgtgcatattagtttatgagggttcaatatcattata 4292335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 33208990 - 33208945
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  33208990 catttatcccgtgcatattagtttatgagggttcaatatcattata 33208945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 37398437 - 37398392
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| || ||||||| ||||||    
T  37398437 catttatcccgtgcattttagtttatgaggggtcaatatcattata 37398392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 9211 - 9256
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| || ||||||| ||||||    
T  9211 catttatcccgtgcattttagtttatgaggggtcaatatcattata 9256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 9649 - 9694
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  9649 catttatcccgtgcatattagtttatgagggttcaatatcattata 9694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 46364756 - 46364801
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    ||||||||||||||||||||||| |||| || ||||||| ||||||    
T  46364756 catttatcccgtgcattttagtttatgaggggtcaatatcattata 46364801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 46365629 - 46365674
Alignment:
Q  227 catttatcccgtgcattttagttgatgaaggttcaatataattata 272  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  46365629 catttatcccgtgcatattagtttatgagggttcaatatcattata 46365674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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