View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_14 (Length: 438)
Name: NF19025_low_14
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 60 - 426
Target Start/End: Original strand, 11741698 - 11742064
Alignment:
| Q |
60 |
tcatttcactcttctgttttacaaagaaacatgctaataataaatgtgaattgtttcactctatggtatgaattgttttactaagaaacatgctagaaat |
159 |
Q |
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| T |
11741698 |
tcatttcactcttctgttttacaaagaaacatgctaataataaatgtgaattgtttcactctatggtatgaattgttttactaagaaacatgctagaaat |
11741797 |
T |
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| Q |
160 |
aaatgtgaattgtatcactatctcttaacccttttaatttcagttgtttgcttgattcaattaggggtttagaattatttttctaaaacctaannnnnnn |
259 |
Q |
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| T |
11741798 |
aaatgtgaattgtatcactatctcttaacccttttaatttcagttgtttgcttgattcaattaggggtttagaattatttttctaaaacctaa-tttttt |
11741896 |
T |
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| Q |
260 |
atggatatgataaaaccccaattaagggttaaatcgtacgaaagattaaacttcatcaaataggtactaagagtccatattttttctcacctaattgaat |
359 |
Q |
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| T |
11741897 |
atagatttgataaaaccccaattaagggttaaatcgtacgaaagattaaacttcatcaaataggtactaagagtccatattttttctcacctaattgaat |
11741996 |
T |
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| Q |
360 |
aagttgttg-cnnnnnnnacttaaatgttaataattcaacttagtcttaatctaggttttcacaggtt |
426 |
Q |
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| T |
11741997 |
aagttgttgtttttttttacttaaatgttaataattcaacttagtcttaatctaggttttcacaggtt |
11742064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 28102729 - 28102685
Alignment:
| Q |
177 |
ctatctcttaacccttttaatttcagttgtttgcttgattcaatt |
221 |
Q |
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| T |
28102729 |
ctatcccttaactcttttaatttcaattgtttgattgattcaatt |
28102685 |
T |
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