View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_15 (Length: 437)
Name: NF19025_low_15
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 55315335 - 55314926
Alignment:
| Q |
20 |
ttagtgttttaaatcacaataatctaagttaaaacaaattctgtattgagtttaaaaagttcagtttgatttggaccaaatcagacttcaaaatgtaacc |
119 |
Q |
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| T |
55315335 |
ttagtgttttaaatcacaataatctaatttaaaacaaattctgtattgagtttaaaaagttcagtttgatttggaccaaatcagacttcaaaatgtaacc |
55315236 |
T |
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| Q |
120 |
caaaaaatcaaatcaaataaacacgttttttgttttcgatttgtcaggtcacatttagtgatttaaatcagattgggtcaattcgtgaacacctctaatt |
219 |
Q |
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| T |
55315235 |
caaaaaatcaaatcaaataaacacgttttttgttttcgatttgtcaggtcacatttagtgatttatatcagattgggtcaattcgtgaacacctctaatt |
55315136 |
T |
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| Q |
220 |
aaaatcatttaatcaacaaaataaaattactgtgataggaaagacaagatagtcaaagtgacacaagaagcaatttaaggaaacataattgtaactcaga |
319 |
Q |
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| T |
55315135 |
aaaatcatttaatcaacaaaataaaattactgtgataggaaagacaagatagtcaaagtgacacaagaagcaatttaaggaaacataattgtaactcaga |
55315036 |
T |
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| Q |
320 |
tgaacttgtaagaataaactgctagctttggtagaagaaaaccacacacac-nnnnnnnggaagcattaccctgttcgtgtgagaaagcactgcgagccg |
418 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55315035 |
tgaacttctaagaataaactgctagctttggtagaagaaaaccacacacacaaaaaaaaggaagcattaccctgttcgtgtgagaaagcactgcgagcca |
55314936 |
T |
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| Q |
419 |
atgatgtcca |
428 |
Q |
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| T |
55314935 |
ttgatgtcca |
55314926 |
T |
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