View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_16 (Length: 428)
Name: NF19025_low_16
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 43363706 - 43363278
Alignment:
| Q |
1 |
ttcaaacagtactgaaaattaagcctttgtatatagtttattagattttgtatgagaagctgcttcaaaatgtagattgtaggcttgtggcaactgtata |
100 |
Q |
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| T |
43363706 |
ttcaaacagtactgaaaattaagcctttgtatatagtttattagattttgtatgagaagctgcttcaaaatgtagattgtaggcttgtggcaactgtata |
43363607 |
T |
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| Q |
101 |
tataggccactaatatgctgaagcttctgaaactgaaatttgtgggaaggtttgataagggattctttttatgaataggacaggatagccataggggcag |
200 |
Q |
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| T |
43363606 |
tataggccactaatatgccgaagcttttgaaactgaaatttgtgggaaggtttgataagggattctgtttatgaataggacaggatagccataggggcag |
43363507 |
T |
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| Q |
201 |
cagaagtggccattccatacaatgctgttctatcttaatgtgattgctt-tgtagtgtgtttgtatgtacatgtnnnnnnnttatacaattgaagaacca |
299 |
Q |
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| T |
43363506 |
cagaagtggccattccatacaatgctgttctatcttaatgtgattgtttgtgtagtgtgtttgtatgtacatgtaaaaaaatgatacaattgaagaacca |
43363407 |
T |
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| Q |
300 |
ttgtccataatttcttcaactttcttttcaatttctctgctttggtacaaacaattgaaaatacaaaatgaaaaatcatatttagaagaatttatcatca |
399 |
Q |
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| T |
43363406 |
ttgtccataatttcttcaactttcttttcaatttctctgctttggtacaaataattgaaaatacaaaatgaaaaatgatatttagaagaatttatcatca |
43363307 |
T |
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| Q |
400 |
aatttattggttaatgaataacaaggcgt |
428 |
Q |
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| T |
43363306 |
aatttattggttaatgaataacaaggcgt |
43363278 |
T |
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