View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19025_low_19 (Length: 408)

Name: NF19025_low_19
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19025_low_19
NF19025_low_19
[»] chr1 (2 HSPs)
chr1 (1-392)||(315088-315482)
chr1 (235-271)||(20505709-20505745)
[»] chr3 (4 HSPs)
chr3 (1-187)||(51719792-51719978)
chr3 (235-273)||(46904144-46904182)
chr3 (235-271)||(10436430-10436466)
chr3 (73-153)||(44307277-44307357)
[»] chr6 (1 HSPs)
chr6 (235-276)||(32737042-32737083)
[»] chr5 (3 HSPs)
chr5 (235-268)||(22580390-22580423)
chr5 (235-271)||(26368935-26368971)
chr5 (235-263)||(40973273-40973301)
[»] chr2 (2 HSPs)
chr2 (235-271)||(3044404-3044440)
chr2 (235-271)||(7900954-7900990)
[»] chr4 (3 HSPs)
chr4 (235-274)||(33895912-33895951)
chr4 (235-271)||(10418952-10418988)
chr4 (235-271)||(40850878-40850914)
[»] scaffold0020 (1 HSPs)
scaffold0020 (235-271)||(124190-124226)
[»] chr7 (3 HSPs)
chr7 (235-271)||(8124252-8124288)
chr7 (235-263)||(15669766-15669794)
chr7 (235-263)||(29125846-29125874)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 315088 - 315482
Alignment:
Q  1 aggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgcaaagagaactgcaggaccagcaacccaacccatctgtgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||     
T  315088 aggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaaagaaaatgcaaagagaactgcaggaccagctacccaacccatttgtgct 315187  T
Q  101 attgcccatgctagtgatagaactccagaaccaatcacagccgttataatatgtgcactagcagtcaaccatgtcccttcaaattcatcaaatcaaaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  315188 attgcccatgctagtgatagaactccagaaccaatcacagccgttataatatgtgcactagcagttaaccatgtcccttcaaattcatcaaatcaaaacc 315287  T
Q  201 atagcaaaattagtacggtaaaaat------annnnnnnnaagaagttaaaatggaatatattactgaaagcctgaaaaaatcag-aacaaaagtatcga 293  Q
    ||||||||||||||||  |||||||      |        |||||| |||||||||||||||||||||||| ||| ||||||||| |  |||||| || |    
T  315288 atagcaaaattagtacaataaaaataaaataaaaaatttgaagaagctaaaatggaatatattactgaaagtctggaaaaatcagcataaaaagtgtcaa 315387  T
Q  294 aaaatcagttgaaagagtatcaatttatnnnnnnnntaatattactagcatataaaaatgcatatttatagttagagataaagcttaaatagaattttt 392  Q
    |||| ||||||||||||||||||||||          |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  315388 aaaaccagttgaaagagtatcaattta----caataaaatattaccagcatataaaaatgcatatttatagttagagataaagctcaaatataattttt 315482  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 20505745 - 20505709
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20505745 aagaagttaaaatggaatatattactgaacgcctgaa 20505709  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 51719792 - 51719978
Alignment:
Q  1 aggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgcaaagagaactgcaggaccagcaacccaacccatctgtgca 100  Q
    ||||||||| ||| |||||||||||||||||||||||||||| || || || || || ||||  |||||||| || ||||||| ||||||||| || ||     
T  51719792 aggtgaacgataagaatcagcaagaagagtggaagtgaaataagttataaaagagaaagcaagtagaactgctgggccagcaatccaacccatttgagct 51719891  T
Q  101 attgcccatgctagtgatagaactccagaaccaatcacagccgttataatatgtgcactagcagtcaaccatgtcccttcaaattca 187  Q
    ||||||||||| |||||||  ||||| || || ||||| || ||||| ||||||||||| ||||||| |||||| ||||||||||||    
T  51719892 attgcccatgcaagtgataacactcctgatcctatcactgctgttatgatatgtgcacttgcagtcacccatgtaccttcaaattca 51719978  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 46904144 - 46904182
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaaaa 273  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  46904144 aagaagttaaaatggaatatattaccgaaaacctgaaaa 46904182  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 10436430 - 10436466
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    |||||| |||||||||||||||||||||| |||||||    
T  10436430 aagaagctaaaatggaatatattactgaacgcctgaa 10436466  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 44307277 - 44307357
Alignment:
Q  73 aggaccagcaacccaacccatctgtgcaattgcccatgctagtgatagaactccagaaccaatcacagccgttataatatg 153  Q
    ||||||| ||| ||||||||  |||||| | ||||||||||  ||||| || ||||| ||||||||||| ||||| |||||    
T  44307277 aggaccaccaatccaacccaattgtgcagtagcccatgctaaggatagcaccccagacccaatcacagctgttattatatg 44307357  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 32737042 - 32737083
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaaaaaat 276  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  32737042 aagaagttaaaatagaatatattactgaaagcctgaaaaaat 32737083  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 22580390 - 22580423
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcct 268  Q
    ||||||||||||||||||||||||||||||||||    
T  22580390 aagaagttaaaatggaatatattactgaaagcct 22580423  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 26368935 - 26368971
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    |||||| |||||||||||||||||||||| |||||||    
T  26368935 aagaagctaaaatggaatatattactgaacgcctgaa 26368971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 40973273 - 40973301
Alignment:
Q  235 aagaagttaaaatggaatatattactgaa 263  Q
    |||||||||||||||||||||||||||||    
T  40973273 aagaagttaaaatggaatatattactgaa 40973301  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 3044440 - 3044404
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3044440 aagaagttaaaatggaatatattactgaacgcctgaa 3044404  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 7900954 - 7900990
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  7900954 aagaagctaaaatgaaatatattactgaaagcctgaa 7900990  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 33895951 - 33895912
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaaaaa 274  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  33895951 aagaagataaaatggaatatattactgaaagcctggaaaa 33895912  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 10418952 - 10418988
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    |||||| |||||||||||||||||||||| |||||||    
T  10418952 aagaagctaaaatggaatatattactgaacgcctgaa 10418988  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 40850914 - 40850878
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    |||||| |||||||||||||||||||||| |||||||    
T  40850914 aagaagctaaaatggaatatattactgaacgcctgaa 40850878  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 124190 - 124226
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    |||||| |||||||||||||||||||||| |||||||    
T  124190 aagaagctaaaatggaatatattactgaacgcctgaa 124226  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 8124288 - 8124252
Alignment:
Q  235 aagaagttaaaatggaatatattactgaaagcctgaa 271  Q
    |||||||||||||| |||||||||||||| |||||||    
T  8124288 aagaagttaaaatgaaatatattactgaacgcctgaa 8124252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 15669794 - 15669766
Alignment:
Q  235 aagaagttaaaatggaatatattactgaa 263  Q
    |||||||||||||||||||||||||||||    
T  15669794 aagaagttaaaatggaatatattactgaa 15669766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 29125846 - 29125874
Alignment:
Q  235 aagaagttaaaatggaatatattactgaa 263  Q
    |||||||||||||||||||||||||||||    
T  29125846 aagaagttaaaatggaatatattactgaa 29125874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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