View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_2 (Length: 666)
Name: NF19025_low_2
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 145 - 654
Target Start/End: Complemental strand, 55317054 - 55316545
Alignment:
| Q |
145 |
ctttaataaaaaatggttttatattgtttcctataaatccagacaagcaaattatacagataaattcattaaaattctaatttccaacaatattatattg |
244 |
Q |
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| T |
55317054 |
ctttaataaaaaatggttttatattgtttcctataaatccagtcaagcaaattatacagataaattcattaaaattctaattttcaacaatattatattg |
55316955 |
T |
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| Q |
245 |
ttttgatttagtcttttatcactagcttctgtttaatgaatgaaaaactggttccgaaatactcttacccggcaactaggattttgacttgctatcatga |
344 |
Q |
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| T |
55316954 |
ttttgatttagtcttttatcactagcttctgtttaatgaatgaaaaactggttccgaaatactcttacccggcaactaggattttgacttgctatcatga |
55316855 |
T |
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| Q |
345 |
attagcttcattgaactatataagataagaaggcagtagatttggactgtagaaaaatatagtattgatacaagtaggaaatgcctgaaattaatgcagt |
444 |
Q |
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| T |
55316854 |
attagcttcattgaactatataagataagaaggcagtagatttggactgtagaaaaatatagtattgatacaggtaggaaatgcctgaaattaatgcagt |
55316755 |
T |
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| Q |
445 |
ccaaaggccataaattcccaacggttggattgtcatagaatgcaataaatcatggcttgggagctttgtgatctaataatagtcaagggtcaaactttag |
544 |
Q |
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| T |
55316754 |
ccaaaggccataaattcccaacggtgggattgtcatagaatgcaataaatcatggcttgggagctttgtgatctaataatagtcaagggtcaaactttag |
55316655 |
T |
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| Q |
545 |
aacatgaacattattgtgccccagagataatgtgaatgttgagctgacattagaacctaactcccttgtttcaacacaagcagtttcttacctaacgtgc |
644 |
Q |
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| T |
55316654 |
aacatgaacattattgtgccccagagataatgtgaatgttgagctgacattagaacctaactcccttgtttcaacacaagcagtttcttacctaacgtgt |
55316555 |
T |
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| Q |
645 |
agttgatgat |
654 |
Q |
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| T |
55316554 |
agttgatgat |
55316545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 55317136 - 55317104
Alignment:
| Q |
41 |
atggtcaacaagacgttagttttttattaagtc |
73 |
Q |
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| T |
55317136 |
atggtcaacaagacgttagttttttattaagtc |
55317104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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