View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_20 (Length: 404)
Name: NF19025_low_20
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 49655069 - 49654700
Alignment:
| Q |
14 |
aggctattagaacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49655069 |
aggctattagaacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgta |
49654970 |
T |
|
| Q |
114 |
aaattagccccccgactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaa |
213 |
Q |
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| T |
49654969 |
aaattag--ccccgactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaa |
49654872 |
T |
|
| Q |
214 |
caaacaaaatcag--nnnnnnnntgcaacatcacataatagaacacccatttgcattttcatcactgaagaactcaaagggaatcaaaggtgtagattga |
311 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654871 |
caaacaaaatcagaaaaaaaaaatgcaacatcacataatagaacacccatttgcattttcatcactgaagaactcaaagggaatcaaaggtgtagattga |
49654772 |
T |
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| Q |
312 |
aactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaaccc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654771 |
aactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaaccc |
49654700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 243 - 383
Target Start/End: Complemental strand, 16486487 - 16486347
Alignment:
| Q |
243 |
cacataatagaacacccatttgcattttcatcactgaagaactcaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaggcctgcac |
342 |
Q |
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| T |
16486487 |
cacataacagaacacccacttgcattttcatcaccgaagaacccaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaagcctgtac |
16486388 |
T |
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| Q |
343 |
acatgtagggtaatggtggaacatagtaagaaggacaaccc |
383 |
Q |
| |
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| T |
16486387 |
acatgcagggtaatggtggaacatagtaagaaggacaaccc |
16486347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 21816423 - 21816563
Alignment:
| Q |
243 |
cacataatagaacacccatttgcattttcatcactgaagaactcaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaggcctgcac |
342 |
Q |
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||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
21816423 |
cacataacagaacacccacttgcattttcatcaccgaagaacccaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaagcctgtac |
21816522 |
T |
|
| Q |
343 |
acatgtagggtaatggtggaacatagtaagaaggacaaccc |
383 |
Q |
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| T |
21816523 |
acatgcagggtaatggtggaacatagtaagaaggacaaccc |
21816563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 14381210 - 14381288
Alignment:
| Q |
242 |
tcacataatagaacacccatttgcattttcatcactgaagaactcaaagggaatcaaaggtgtagattgaaactgataa |
320 |
Q |
| |
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||||||||| ||||| ||| |||||||||||||||| || |||||||| |||| ||| ||| |||||||| ||||||| |
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| T |
14381210 |
tcacataatggaacatccacttgcattttcatcactaaataactcaaaaggaaccaacggtccagattgaacctgataa |
14381288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 8551505 - 8551537
Alignment:
| Q |
84 |
cagtgttaagactaagatcttctaaatgtaaaa |
116 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
8551505 |
cagtgtcaagactaagatcttctaaatgtaaaa |
8551537 |
T |
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