View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_21 (Length: 401)
Name: NF19025_low_21
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 65 - 393
Target Start/End: Complemental strand, 34728161 - 34727841
Alignment:
| Q |
65 |
gcagataaaataaaaatgaacaactttaactgttaagaataccactctattaattactatttatggtagctcatgttcctattttctctttttccaaaga |
164 |
Q |
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| T |
34728161 |
gcagataaaataaaaatgaacaactttaactgttaagaataccactctattacttactatttatggtagctcatgttcctattttctctttttccaaaga |
34728062 |
T |
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| Q |
165 |
ctttgatggtaatggtttaagtaaagactgaacttttatgaaaaacaagtcattttgttgtgtttgtgttctgttttagcttatcattttctgatacagt |
264 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34728061 |
ctttgatggtaatggtttaagtaaagactgaaattttatgaaaaacaagtcattttgttgtgtttgtgttctgttttagcttatcattttctgatacagt |
34727962 |
T |
|
| Q |
265 |
taagttttcatcagtttctttatatccctctatgctgtaactatgtaactgtgtctttatttaaggaacaatcagtaactgtttagtatatgttttgttt |
364 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34727961 |
taagttttcatcagtttctttttatccctctatgctgt--------aactgtgtctttgattaagtaacaatcagtaactgtttagtatatgttttgttt |
34727870 |
T |
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| Q |
365 |
tataagattaatccatatgactctgtgct |
393 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
34727869 |
tataagattaatccatatgactctatgct |
34727841 |
T |
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