View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19025_low_26 (Length: 342)
Name: NF19025_low_26
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 30455709 - 30456021
Alignment:
| Q |
19 |
attacagtgtgaacttgtggaagtgtcagcttcaaaaatgtttacctaattccttgcaagtggaatgcatgcaccatctcatacatttacctttttgttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30455709 |
attacagtgtgaacttgtggaagtgtcagcttcaaaaatgtttacctaatttcttgcaagtggaatgcatgcaccatctcatacatttacctttttgttt |
30455808 |
T |
|
| Q |
119 |
acattcgttgaatcagtaaatgggcgaaatgggcgatgattacaaagagaaaagatgtcttatgtgggaaacaatacccaattccatccattgcatttca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30455809 |
acattcgttgaatcagtaaatgggcgaaatgggcgatgattactaagagataagatgtcttatgtgggaaacaatacccaattccatccattgcatttca |
30455908 |
T |
|
| Q |
219 |
caaatggtatgtgggaaataaaaaccaattttctagataagaagtttgaaacctttatttgtctcggattttgtttttggacccaattatattttcatat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30455909 |
caaatggtatgtgggaaataaaaaccaattttctagataagaagtttgatacctttatttgtcttggattttgtttttggacccaattatattttcatat |
30456008 |
T |
|
| Q |
319 |
aatgttttttctt |
331 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30456009 |
aatgttttttctt |
30456021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 30454169 - 30454234
Alignment:
| Q |
144 |
gaaatgggcgatgattacaaagagaaaagatgtcttatgtgggaaacaatacccaattccatccat |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
30454169 |
gaaatgggcgatgattacaaagagagaagatgtcttatgtaggaaataatacccaattccatccat |
30454234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 30451895 - 30451956
Alignment:
| Q |
145 |
aaatgggcgatgattacaaagagaaaagatgtcttatgtgggaaacaatacccaattccatc |
206 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
30451895 |
aaatgggcgatgattacaaagagagaaaatgtcttatgtgggaaataatacccaattccatc |
30451956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 30481091 - 30481156
Alignment:
| Q |
144 |
gaaatgggcgatgattacaaagagaaaagatgtcttatgtgggaaacaatacccaattccatccat |
209 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30481091 |
gaaaggggcgatgattacaaagagagatgatgtcttatgtgggaaataatacccaattccatccat |
30481156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 30488604 - 30488695
Alignment:
| Q |
46 |
agcttcaaaaatgttt--acctaattccttgcaagtggaatgcatgcaccatctcatacatttacctttttgtttacattcgttgaatcagt |
135 |
Q |
| |
|
|||||||||||||||| |||||||| |||| | | |||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
30488604 |
agcttcaaaaatgtttttacctaatttcttgagatttgaatgcatccaccatctcctacatttacctctttgtttacatttgttgaatcagt |
30488695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 30519356 - 30519432
Alignment:
| Q |
59 |
tttacctaattccttgcaagtggaatgcatgcaccatctcatacatttacctttttgtttacattcgttgaatcagt |
135 |
Q |
| |
|
||||||||||| |||| ||| |||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
30519356 |
tttacctaatttcttgagagttgaatgcatccaccatctcctacctttacctttttgtttacatttgttgaatcagt |
30519432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 30503270 - 30503330
Alignment:
| Q |
149 |
gggcgatgattacaaagagaaaagatgtcttatgtgggaaacaatacccaattccatccat |
209 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||| ||| | |||| |||||||||||| |
|
|
| T |
30503270 |
gggcgatgattacaaagaaagaagatgtcttacgtggaaaatattacctaattccatccat |
30503330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 6173380 - 6173441
Alignment:
| Q |
71 |
cttgcaagtggaatgcatgcaccatctcatacatttacctttttgtttacattcgttgaatc |
132 |
Q |
| |
|
|||| ||||||||||| | ||||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
6173380 |
cttgaaagtggaatgcttccaccatctcctacatttaccgttttgtttacatttgttgaatc |
6173441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University