View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_28 (Length: 335)
Name: NF19025_low_28
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 40693367 - 40693197
Alignment:
| Q |
20 |
gcaaccatcataagattctcaaaaaacaaattcaaatcctcagtctttaaattatccttcccaaccatttcagtttcccctcaccaaaaatcatcaactt |
119 |
Q |
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| T |
40693367 |
gcaaccatcataagattctcaaaaaacaaattcaaatcctcagtctttaaattatccttcccaaccatttcagtttcccctcaccaaaaatcatcaactt |
40693268 |
T |
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| Q |
120 |
tcctagctgtcacaaaaggataagataactactaattagccatagctaaattccaaaacttttgctttcag |
190 |
Q |
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| T |
40693267 |
tcctagctgtcacaaaaggataagataactactaattagccatagcaaaattccaaaacttttgctttcag |
40693197 |
T |
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Back To:
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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 40693136 - 40693072
Alignment:
| Q |
255 |
ctgatgtgactgagcaatttgcagaaagcaacatgaggataattacaattataattggaaaacat |
319 |
Q |
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| T |
40693136 |
ctgatgtgactgagcaatttgcagaaagcaacatgaggataattacaattataattggaaaacat |
40693072 |
T |
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