View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_29 (Length: 320)
Name: NF19025_low_29
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 42621279 - 42621583
Alignment:
| Q |
6 |
gtcgaagaaaattaacattgtacttgcaacttagccttactaagtactctataaacca--------atgtaggtttttcgcataatggcaaaaatcctca |
97 |
Q |
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| T |
42621279 |
gtcgaacagaattgacattgtacttgcaacttagccttactaagtactctataaaccaatgtaccaatgtaggtttttcgcataatggcaaaaatcctca |
42621378 |
T |
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| Q |
98 |
aggcaaacgacttgcttgcgcagaaataaatatgagcttcagatgttaatagtactttatttcatgtacaataaactgaaaattgacatgataaaaaatg |
197 |
Q |
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| T |
42621379 |
aggcaaacgacttgcttgcacagaaataaatatcagcttcagatgttaatagtactttatttcatgtacaataaactgaaaattgacatgataaaaaatg |
42621478 |
T |
|
| Q |
198 |
tggattcaactattattatgaagtgaatgaagatagtgaattcattgattgataaggattgtacaagtactatttatatacaaatgaagctctatgctag |
297 |
Q |
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| T |
42621479 |
tggattcaactgttattatgaagtgaatgaagatagtgaattcattgatttataaggattgta-aagtactatttatatacaaatgaagctctatgctag |
42621577 |
T |
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| Q |
298 |
cttatt |
303 |
Q |
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| T |
42621578 |
cttatt |
42621583 |
T |
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Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 45639658 - 45639566
Alignment:
| Q |
211 |
tattatgaagtgaatgaagatagtgaattcattgattgataaggattgtacaagtactatttatatacaaatgaagctctatgctagcttatt |
303 |
Q |
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| T |
45639658 |
tattatgaagtgaatgaatatagtgaatccattaattgataatgactgtacaagtgctatttatatacaaatgtagctcaatggtagcttatt |
45639566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 9101057 - 9101125
Alignment:
| Q |
220 |
gtgaatgaagatagtgaattcattgattgataaggattgtacaagtactatttatatacaaatgaagct |
288 |
Q |
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| T |
9101057 |
gtgaatgaaaatagtaaattcattgattgataatgattgtacaacctctatttatatacgaatgaagct |
9101125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 38638332 - 38638414
Alignment:
| Q |
221 |
tgaatgaagatagtgaattcattgattga-taaggattgtacaagtactatttatatacaaatgaagctctatgctagcttatt |
303 |
Q |
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| T |
38638332 |
tgaatgaa-atagtgaattcaatgattgaatattgaatgtacaattgctatttatatacaaatgagactctatgctagcttatt |
38638414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Complemental strand, 45210790 - 45210755
Alignment:
| Q |
268 |
tatttatatacaaatgaagctctatgctagcttatt |
303 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
45210790 |
tatttatatacaaatgaagctctattctagcttatt |
45210755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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