View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_38 (Length: 242)
Name: NF19025_low_38
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_38 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44608225 - 44608392
Alignment:
| Q |
1 |
aatgttctgttcaacttggtttgcagattgtaggcagaaattctgaggaacagcagaaaatgtttgggagacattttgggattaatgatgaacttgtaag |
100 |
Q |
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| T |
44608225 |
aatgttctgttcaacttggtttgcagattgtaggcagaaattctgaggaacagcagaaaatgtttgggagacattttgggattaatgatgaacttgtaag |
44608324 |
T |
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| Q |
101 |
ccatatttcacggagatctattgatgttctaaaaaagtattatcaagtaagccattaataataataat |
168 |
Q |
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| T |
44608325 |
ccatatttcacggagatctattgatgttctaaaaaattattatcaagtaagccattaataataataat |
44608392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44630199 - 44630366
Alignment:
| Q |
1 |
aatgttctgttcaacttggtttgcagattgtaggcagaaattctgaggaacagcagaaaatgtttgggagacattttgggattaatgatgaacttgtaag |
100 |
Q |
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| T |
44630199 |
aatgttctgttcaactttgtttgcagattgttggcagcaattctgaagaacagcagaaaatgttcgggaggcattttgagattgatgatgaacttgtaag |
44630298 |
T |
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| Q |
101 |
ccatatttcacggagatctattgatgttctaaaaaagtattatcaagtaagccattaataataataat |
168 |
Q |
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| T |
44630299 |
ccatatttcacggagatctattgatattctcaaaactaattatcgggtaagtcatcaataataataat |
44630366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 3016335 - 3016425
Alignment:
| Q |
5 |
ttctgttcaacttggtttgcagattgtaggcagaaattctgaggaacagcagaaaatgtttgggagacattttgggattaatgatgaactt |
95 |
Q |
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| T |
3016335 |
ttctgttgaactttgtttgcagattgttggcagcaattctgaggaacgacagaaaatgtttgggaggcattttgggattgatgatgaactt |
3016425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40670877 - 40670776
Alignment:
| Q |
1 |
aatgttctgttcaacttggtttgcagattgtaggcagaaattctgaggaacagcagaaaatgtttgggagacattttgggattaatgatgaacttgtaag |
100 |
Q |
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||||| ||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| |||||| |||| |||||||||||| || |
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| T |
40670877 |
aatgtgctgttcaacttggtttgcagattgttggcagcagttctgaggaacgacagaaaatgtttgggaggcatttttggat---tgatgaacttgtgag |
40670781 |
T |
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| Q |
101 |
ccata |
105 |
Q |
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||||| |
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| T |
40670780 |
ccata |
40670776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 20434155 - 20434216
Alignment:
| Q |
181 |
gtcgtttatatcccacatagtgttatttgttactaaagttcgatgaaagcaaaggggaaact |
242 |
Q |
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| T |
20434155 |
gtcgtttatatcccacatggtgttattttttactaaatttcgatgaaagcaaaggggaaact |
20434216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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