View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19025_low_48 (Length: 212)
Name: NF19025_low_48
Description: NF19025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19025_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 41894540 - 41894345
Alignment:
| Q |
1 |
aaaaagtgaagtttctattgtccctaacactaccaaaataatactaacttaattgatgttccatcataaaaattattcttggttaggaatttcacataga |
100 |
Q |
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| T |
41894540 |
aaaaagtgaagtttctattgtccctaacaccaccaaaataatactaacttaattgatgttccatcataaaaattattcttggttaggaatttcacataga |
41894441 |
T |
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| Q |
101 |
aatatattactctaaactatatacaggtttcctactttgtaactagacagggttggatgaaatataatcagaaatagaatcaattagtgatggaaa |
196 |
Q |
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| T |
41894440 |
aatatattactataaactatatacaggtttcctactttgtaactagacagggttggatgaaatataatcagaaatagaatcaattagtgatggaaa |
41894345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41898418 - 41898349
Alignment:
| Q |
1 |
aaaaagtgaagtttctattgtccctaacactaccaaaataatactaacttaattgatgttccatcataaaaa |
72 |
Q |
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|||||||||||||||||||||||| |||| |||||||| || |||||||||||||||| | ||||||||| |
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| T |
41898418 |
aaaaagtgaagtttctattgtcccaaacagcaccaaaat--tattaacttaattgatgtttcttcataaaaa |
41898349 |
T |
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